Pseudonocardia mangrovi (TBRC 7778, NBRC 113150, SMC 195)

Name: Pseudonocardia mangrovi (TBRC 7778, NBRC 113150, SMC 195)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159738

Type strain

Culture col. no. TBRC 7778 NBRC 113150 SMC 195

NCBI tax ID(s) 2283313

Special Collections Literature strains

Links

Pseudonocardia mangrovi TBRC 7778 is an aerobe, spore-forming, Gram-positive prokaryote that was isolated from soil in a mangrove forest .

spore-forming Gram-positive aerobe 16S sequence

Name and taxonomic classification

SI-ID 25097

TBRC 7778,NBRC 113150

@ref 20215

Last LPSN update 2025-12-16 10:08:20

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia mangrovi

Full scientific name Pseudonocardia mangrovi Chanama et al. 2018

Morphology

Cell morphology

66657

Gram stainpositive

Multicellular morphology

@ref	Forms multicellular complex	Complex color	Medium name	Further description
66657		orange-yellow or yellow-brown		extensively branched substrate and aerial mycelia. The substrate mycelium is fragmented into rod-shaped elements, and spore chains consisting of smooth and rod-shaped spores are formed on the aerial mycelium
66657		white	ISP2, ISP3, ISP4, ISP5, ISP7	aerial mycelium

Culture and growth conditions

Culture medium

@ref	Name	Growth
66657	ISP 2
66657	ISP 3
66657	ISP 4
66657	ISP 5
66657	ISP 7
66657	Nutrient agar (NA)
66657	yeast-starch agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66657	positive	growth	20-40
66657	positive	optimum	28-30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
66657	positive	optimum	6-8
66657	positive	growth	6-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

66657

Oxygen toleranceaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
66657	spore chains consisting of smooth and rod-shaped spores	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66657	NaCl	positive	growth	0-7 %(w/v)
66657	NaCl	positive	optimum	1-4 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66657	15824 ChEBI	D-fructose	+	carbon source
66657	12936 ChEBI	D-galactose	+	carbon source
66657	17634 ChEBI	D-glucose	+	carbon source
66657	16988 ChEBI	D-ribose	+	carbon source
66657	17317 ChEBI	D-sorbose	+	carbon source
66657	65327 ChEBI	D-xylose	+	carbon source
66657	5291 ChEBI	gelatin	-	hydrolysis
66657	17754 ChEBI	glycerol	+	carbon source
66657	17368 ChEBI	hypoxanthine	-	hydrolysis
66657	18403 ChEBI	L-arabitol	+	carbon source
66657	37684 ChEBI	mannose	+	carbon source
66657		milk	-	assimilation
66657	17268 ChEBI	myo-inositol	+	carbon source
66657	17632 ChEBI	nitrate	-	reduction
66657	16634 ChEBI	raffinose	+	carbon source
66657	28017 ChEBI	starch	+	hydrolysis
66657	17992 ChEBI	sucrose	+	carbon source
66657	27082 ChEBI	trehalose	+	carbon source
66657	15318 ChEBI	xanthine	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
66657	acid phosphatase	+	3.1.3.2
66657	alkaline phosphatase	+	3.1.3.1
66657	alpha-chymotrypsin	+	3.4.21.1
66657	alpha-glucosidase	+	3.2.1.20
66657	cystine arylamidase	+	3.4.11.3
66657	esterase (C 4)	+
66657	esterase Lipase (C 8)	+
66657	leucine arylamidase	+	3.4.11.1
66657	naphthol-AS-BI-phosphohydrolase	+
66657	trypsin	+	3.4.21.4
66657	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

66657

Fatty acid	Percentage
C16:0 iso	33.6
C16:1 w7c and/or C16:1 w6c	14.4
C16:0 10-methyl	11.2
C16:0	9.1
C15:0 iso	7.2
C17:0 iso	5.1
C16:1 iso H	4.9
C17:0 anteiso	3.2
C17:1 w8c	2.4
C17:0 10-methyl	1.2
C17:0	1.2
C18:0	1.1
C16:0 2OH
C15:0 anteiso

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Isolation procedure
66657	soil in a mangrove forest (organic layer of the loam soil with pH of 6.8)	Samut Prakan province	Thailand	THA	Asia	humic acid-salts vitamin agar	supplemented with cycloheximide (50 mg l-1) and nystatin (50 mg l-1)	The sample was taken from the organic layer of the loam soil with pH of 6.8, and kept at -20°C before being air-dried at 37°C for 7 days. The novel strain was isolated on humic acid-salts vitamin agar and then sub-cultivated on International Streptomyces Project 3 medium.

Taxonmaps

69479

Global distribution of 16S sequence KY859773 (>99% sequence identity) for Pseudonocardia from Microbeatlas

Aquatic Samples	140
Soil Samples	657
Animal Samples	122
Plant Samples	209
Total Samples	1128

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66657	Pseudonocardia mangrovi strain SMC 195 16S ribosomal RNA gene, partial sequence	KY859773	1474		2283313

GC content

@ref	GC-content (mol%)	Method
66657	73.2-74.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Beneficial bacterial-Auricularia cornea interactions fostering growth enhancement identified from microbiota present in spent mushroom substrate.	Phithakrotchanakoon C, Mayteeworakoon S, Siriarchawatana P, Kitikhun S, Harnpicharnchai P, Wansom S, Eurwilaichitr L, Ingsriswang S.	Front Microbiol	10.3389/fmicb.2022.1006446	2022
Phylogeny	Pseudonocardia mangrovi sp. nov., isolated from soil.	Chanama S, Janphen S, Suriyachadkun C, Chanama M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002927	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66657	Suchart Chanama, Suphansa Janphen, Chanwit Suriyachadkun, Manee Chanama: Pseudonocardia mangrovi sp. nov., isolated from soil. IJSEM 68: 2949 - 2955 2018 ( DOI 10.1099/ijsem.0.002927 , PubMed 30040061 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudonocardia mangrovi (TBRC 7778, NBRC 113150, SMC 195)

Name and taxonomic classification