Sphingomonas carotinifaciens (CFCC 13949, LMG 30133, B093034)

Name: Sphingomonas carotinifaciens (CFCC 13949, LMG 30133, B093034)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159734

Type strain

Strain Designation B093034

Culture col. no. CFCC 13949 LMG 30133 B093034

NCBI tax ID(s) 1166323

Special Collections Literature strains

Links

Sphingomonas carotinifaciens B093034 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from air sample.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 273122

LMG 30133

@ref 20215

Last LPSN update 2026-02-09 11:38:43

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas carotinifaciens

Full scientific name Sphingomonas carotinifaciens Madhaiyan et al. 2017

Synonyms (1)

Sphingomonas aeria

BacDive ID	Other strains from **Sphingomonas carotinifaciens** (1)	Type strain
141164	S. carotinifaciens L9-754, DSM 27347, KACC 17595 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
66643	negative	1.6-2.1 µm	0.7-0.9 µm	rod-shaped
125438	negative					97.302

Colony morphology

@ref	Colony color	Colony shape	Medium used
66643	yellow	circular	Tryptic Soy Agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
66643	Marine agar (MA) 2216
66643	Nutrient agar (NA)
66643	tryptic soy agar (TSA)
66643	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
66643	positive	optimum	28
66643	positive	growth	4-41

Culture pH

@ref	Ability	Type	PH	PH range
66643	positive	optimum	7
66643	positive	growth	4.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66643	aerobe
125439	obligate aerobe	96

Spore formation

66643

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66643	NaCl	positive	growth	0-7 %(w/v)
66643	NaCl	positive	optimum	0-2 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66643	30796 ChEBI	(R)-malic acid	+	assimilation
66643		4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	assimilation
66643	15824 ChEBI	D-fructose	+	builds acid from
66643	17634 ChEBI	D-glucose	+	assimilation
66643	17634 ChEBI	D-glucose	+	builds acid from
66643	16024 ChEBI	D-mannose	+	assimilation
66643	16024 ChEBI	D-mannose	+	builds acid from
66643	4853 ChEBI	esculin	+	assimilation
66643	5291 ChEBI	gelatin	+	assimilation
66643	30849 ChEBI	L-arabinose	+	assimilation
66643	17306 ChEBI	maltose	+	assimilation
66643	17306 ChEBI	maltose	+	builds acid from
66643	59640 ChEBI	N-acetylglucosamine	+	assimilation
66643	17632 ChEBI	nitrate	-	reduction
66643	32032 ChEBI	potassium gluconate	+	assimilation
66643	53258 ChEBI	sodium citrate	+	assimilation
66643	28017 ChEBI	starch	-	hydrolysis
66643	17992 ChEBI	sucrose	+	builds acid from
66643	27082 ChEBI	trehalose	+	builds acid from
66643	32528 ChEBI	turanose	+	builds acid from
66643	53424 ChEBI	tween 20	-	hydrolysis
66643	53423 ChEBI	tween 40	+	hydrolysis
66643	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66643	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66643	acid phosphatase	+	3.1.3.2
66643	alkaline phosphatase	+	3.1.3.1
66643	alpha-chymotrypsin	+	3.4.21.1
66643	alpha-galactosidase	+	3.2.1.22
66643	alpha-glucosidase	+	3.2.1.20
66643	beta-D-fucosidase	-	3.2.1.38
66643	beta-galactosidase	+	3.2.1.23
66643	beta-glucosidase	+	3.2.1.21
66643	beta-glucuronidase	-	3.2.1.31
66643	catalase	+	1.11.1.6
66643	cystine arylamidase	+	3.4.11.3
66643	cytochrome oxidase	-	1.9.3.1
66643	esterase (C 4)	+
66643	esterase Lipase (C 8)	+
66643	leucine arylamidase	+	3.4.11.1
66643	lipase (C 14)	-
66643	N-acetyl-beta-glucosaminidase	+	3.2.1.52
66643	naphthol-AS-BI-phosphohydrolase	+
66643	trypsin	+	3.4.21.4
66643	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Isolation procedure
66643	air sample	foot of Xiangshan mountain, located in Beijing	China	CHN	Asia	nutrient agar	originally grown on nutrient agar and sub-cultivated on tryptic soy agar at 28°C for 48 h.

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM328739v1 assembly for Sphingomonas carotinifaciens B093034	contig	GCA_003287395	2052949.3	1166323	69.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66643	Sphingomonas carotinifaciens 16S ribosomal RNA gene, partial sequence	MG020520	1428		1166323

GC content

@ref	GC-content (mol%)	Method
66643	67.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingomonas carotinifaciens B093034
NCBI: GCA_003287395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	51.10	no
125439	motility	BacteriaNetⓘ	yes	58.70	no
125439	gram_stain	BacteriaNetⓘ	negative	81.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas carotinifaciens B093034
NCBI: GCA_003287395.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.30	yes
125438	anaerobic	anaerobicⓘ	no	90.06	yes
125438	aerobic	aerobicⓘ	yes	88.76	yes
125438	spore-forming	spore-formingⓘ	no	87.20	yes
125438	thermophilic	thermophileⓘ	no	94.99	yes
125438	flagellated	motile2+ⓘ	yes	69.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas aeria sp. nov., isolated from air.	Xue H, Piao CG, Wang XZ, Lin CL, Guo MW, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002910	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66643	Han Xue, Chun-gen Piao, Xi-zhuo Wang, Cai-li Lin, Min-wei Guo, Yong Li: Sphingomonas aeria sp. nov., isolated from air. IJSEM 68: 2866 - 2871 2018 ( DOI 10.1099/ijsem.0.002910 , PubMed 30010528 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas carotinifaciens (CFCC 13949, LMG 30133, B093034)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003287395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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