Streptomyces geranii (CGMCC 4.7422, JCM 32177, A301)

Name: Streptomyces geranii (CGMCC 4.7422, JCM 32177, A301)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159717

Type strain

Strain Designation A301

Culture col. no. CGMCC 4.7422 JCM 32177 A301

NCBI tax ID(s) 2058923

Special Collections JCM Literature strains

History JCM <-- Y. Tian; Sichuan Univ., China; A301.

Links

Streptomyces geranii A301 is a spore-forming, Gram-positive bacterium that was isolated from root of Geranium carolinianum.

spore-forming Gram-positive genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132647

JCM 32177

@ref 20215

Last LPSN update 2026-05-29 08:44:15

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces geranii

Full scientific name Streptomyces geranii Li et al. 2018

Morphology

Cell morphology

@ref	Confidence	Gram stain
66617		positive
125439	95.019
125439	99.322	positive

Multicellular morphology

@ref	Forms multicellular complex	Complex color	Medium name	Further description
66617		white or greyish white or light grey	ISP1, ISP5, NA, modified Bennett's, Czapek's media, ISP2, ISP3, ISP4	actinomycete with an extensively branched substrate and aerial mycelia which can differentiate into flexuous spore chains with smooth-surfaced spores. The aerial mycelia appeared white on ISP 1, ISP 5, NA, modified Bennett's and Czapek's media, greyish white on ISP 2, greyish on ISP 3 and light grey on ISP 4.

Culture and growth conditions

Culture medium

@ref	Name	Composition
66617	Czapek's agar
66617	ISP 1
66617	ISP 2
66617	ISP 3
66617	ISP 4
66617	ISP 5
66617	modified Bennett's agar	(1 g yeast extract, 1 g beef extract, 2 g casein peptone, 10 g glycerol, 15 g agar, 1 l distilled water; pH 7.0-7.2)
66617	Nutrient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)
66617	positive	optimum	28
66617	positive	growth	10-37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
66617	positive	optimum	7
66617	positive	growth	6-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.85

Spore formation

@ref	Spore description	Type of spore	Spore formation
66617	flexuous spore chains with smooth-surfaced spores	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66617	NaCl	positive	growth	0-5 %(w/v)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66617	17057 ChEBI	cellobiose	+	carbon source
66617	62968 ChEBI	cellulose	-	degradation
66617	16919 ChEBI	creatine	+	nitrogen source
66617	15824 ChEBI	D-fructose	+	carbon source
66617	12936 ChEBI	D-galactose	+	carbon source
66617	16988 ChEBI	D-ribose	+	carbon source
66617	17924 ChEBI	D-sorbitol	-	carbon source
66617	65327 ChEBI	D-xylose	+	carbon source
66617	16813 ChEBI	galactitol	-	carbon source
66617	17234 ChEBI	glucose	+	carbon source
66617	17234 ChEBI	glucose	-	fermentation
66617	17754 ChEBI	glycerol	+	carbon source
66617	15428 ChEBI	glycine	+	nitrogen source
66617	16977 ChEBI	L-alanine	+	nitrogen source
66617	30849 ChEBI	L-arabinose	-	carbon source
66617	16467 ChEBI	L-arginine	+	nitrogen source
66617	17196 ChEBI	L-asparagine	+	nitrogen source
66617	29991 ChEBI	L-aspartate	+	nitrogen source
66617	15971 ChEBI	L-histidine	+	nitrogen source
66617	18019 ChEBI	L-lysine	+	nitrogen source
66617	16643 ChEBI	L-methionine	-	nitrogen source
66617	17295 ChEBI	L-phenylalanine	+	nitrogen source
66617	17203 ChEBI	L-proline	+	nitrogen source
66617	62345 ChEBI	L-rhamnose	+	carbon source
66617	17115 ChEBI	L-serine	+	nitrogen source
66617	16857 ChEBI	L-threonine	-	nitrogen source
66617	17895 ChEBI	L-tyrosine	+	nitrogen source
66617	16414 ChEBI	L-valine	+	nitrogen source
66617	17716 ChEBI	lactose	+	carbon source
66617	17306 ChEBI	maltose	-	carbon source
66617	29864 ChEBI	mannitol	+	carbon source
66617		milk	+	assimilation
66617	17268 ChEBI	myo-inositol	+	carbon source
66617	17632 ChEBI	nitrate	-	reduction
66617	53258 ChEBI	sodium citrate	+	carbon source
66617	28017 ChEBI	starch	+	carbon source
66617	28017 ChEBI	starch	+	hydrolysis
66617	17992 ChEBI	sucrose	+	carbon source
66617	53424 ChEBI	tween 20	+	degradation
66617	53425 ChEBI	tween 60	-	degradation
66617	53426 ChEBI	tween 80	-	degradation

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
66617	17698	chloramphenicol	30 µg (disc)
66617	100241	ciprofloxacin		5 µg (disc)
66617	48923	erythromycin		15 µg (disc)
66617	17833	gentamicin		10 µg (disc)
66617	6104	kanamycin		15 µg (disc)
66617	100246	norfloxacin	10 µg (disc)
66617	28368	novobiocin		5 µg (disc)
66617	7809	oxacillin	1 µg (disc)
66617	17334	penicillin		10 Unit (disc)
66617	8232	piperacillin	100 µg (disc)
66617	8309	polymyxin b	30 µg (disc)
66617	17076	streptomycin		10 µg (disc)
66617	27902	tetracycline		30 µg (disc)
66617	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
66617	15688 ChEBI	acetoin
66617	16136 ChEBI	hydrogen sulfide
66617	89634 ChEBI	melanin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
66617	15688 ChEBI	acetoin	-
66617	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
66617	catalase	+	1.11.1.6
66617	cytochrome oxidase	+	1.9.3.1
66617	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

66617

Fatty acid	Percentage
C16:0 iso	19.5
C16:0	16.1
C15:0	16.1
C15:0 anteiso	13
C16:1 w7c	8.7
C17:0 anteiso	6.1
C14:0 iso	5.3
C17:1 iso w5c	3.4
C17:0	3.4
C18:0	2.7
C17:0 cyclo w7c	2.3
C14:0	1.2
C13:0 anteiso	0.5
C13:0	0.5
C18:1 w8c	0.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66617	root of Geranium carolinianum	Geranium carolinianum	Mount Emei	China	CHN	Asia	water-yeast extract agar	supplemented with actidione (50 mg l-1) and nalidixic acid (25 mg l-1)	2-6 weeks	28	fresh root tissue samples were air-dried, washed completely and surface-sterilized, as described by Coombs and Franco. Surface-sterilized roots were cut aseptically into small pieces and then distributed onto water-yeast extract agar and cultured at 28°C for 2-6 weeks
67770	Root of Geranium carolinianum	Geranium carolinianum	Mount Emei, south-west China	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM295477v1 assembly for Streptomyces geranii A301	scaffold	GCA_002954775	2058923.3	2862674093	2058923	51.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66617	Streptomyces geranii strain A301 16S ribosomal RNA gene, partial sequence	MF100124	1551		2058923

GC content

@ref	GC-content (mol%)	Method
66617	70.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM295477v1 assembly for Streptomyces geranii A301
NCBI: GCA_002954775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.32	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.85	no
125439	motility	BacteriaNetⓘ	no	95.02	no
125439	spore_formation	BacteriaNetⓘ	yes	87.48	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces geranii sp. nov., a novel endophytic actinobacterium isolated from root of Geranium carolinianum L.	Li X, Lai X, Gan L, Long X, Hou Y, Zhang Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002876	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66617	Xiaoguang Li, Xinting Lai, Longzhan Gan, Xiufeng Long, Yanyan Hou, Yuqing Zhang, Yongqiang Tian: Streptomyces geranii sp. nov., a novel endophytic actinobacterium isolated from root of Geranium carolinianum L.. IJSEM 68: 2562 - 2567 2018 ( DOI 10.1099/ijsem.0.002876 , PubMed 29944094 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces geranii (CGMCC 4.7422, JCM 32177, A301)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002954775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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