Name: Litoribrevibacter euphylliae BCRC 81004
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159713

Type strain:

Species: Litoribrevibacter euphylliae

Culture col. no.: BCRC 81004, LMG 29725, KCTC 52438, Eup a-2

Strain history: <- Wen-Ming Chen, National Kaohsiung Marine Univ.

NCBI tax ID(s): 1834034 (species)

Section

Litoribrevibacter euphylliae BCRC 81004 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from torch coral Euphyllia glabrescens .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Litoribrevibacter*
	Species	**Litoribrevibacter euphylliae**
	Full Scientific Name (LPSN)	Litoribrevibacter euphylliae Sheu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66549]	Gram stain	negative

[Ref.: #66549]	Cell length	1.5-2.5 µm

[Ref.: #66549]	Cell width	0.4-0.6 µm

[Ref.: #66549]	Cell shape	rod-shaped

[Ref.: #66549]	Motility	yes

[Ref.: #66549]	Colony size	0.5-1.5 mm
[Ref.: #66549]	Colony shape	circular
[Ref.: #66549]	Incubation period	2 days
[Ref.: #66549]	Cultivation medium used	Marine agar (MA) 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66549]

Culture medium

Marine agar (MA) 2216

[Ref.: #66549]

Culture medium growth

		Temperature
[Ref.: #66549]	optimum	25 °C
[Ref.: #66549]	growth	15-40 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #66549]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66549]			optimum	6-8
[Ref.: #66549]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66549]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66549]		NaCl		growth	1-6	%
[Ref.: #66549]		NaCl		optimum	2-4	%

[Ref.: #66549]

Observation

Poly-b-hydroxybutyrate accumulation is observed.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66549]	adipate ChEBI	-	assimilation
[Ref.: #66549]	alginate ChEBI	-	hydrolysis
[Ref.: #66549]	amygdalin ChEBI	-	builds acid from
[Ref.: #66549]	amygdalin ChEBI	-	fermentation
[Ref.: #66549]	arabinose ChEBI	-	assimilation
[Ref.: #66549]	arabinose ChEBI	+	fermentation
[Ref.: #66549]	arbutin ChEBI	-	builds acid from
[Ref.: #66549]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #66549]	casein	-	hydrolysis
[Ref.: #66549]	cellobiose ChEBI	+	builds acid from
[Ref.: #66549]	chitin ChEBI	-	hydrolysis
[Ref.: #66549]	citric acid ChEBI	-	assimilation
[Ref.: #66549]	corn oil	+	hydrolysis
[Ref.: #66549]	D-arabinose ChEBI	+	builds acid from
[Ref.: #66549]	D-arabitol ChEBI	+	builds acid from
[Ref.: #66549]	D-fructose ChEBI	+	builds acid from
[Ref.: #66549]	D-fucose ChEBI	+	builds acid from
[Ref.: #66549]	D-galactose ChEBI	+	builds acid from
[Ref.: #66549]	D-glucose ChEBI	+	builds acid from
[Ref.: #66549]	D-lyxose ChEBI	+	builds acid from
[Ref.: #66549]	D-mannitol ChEBI	+	builds acid from
[Ref.: #66549]	D-mannose ChEBI	+	builds acid from
[Ref.: #66549]	D-ribose ChEBI	+	builds acid from
[Ref.: #66549]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #66549]	D-tagatose ChEBI	+	builds acid from
[Ref.: #66549]	D-xylose ChEBI	+	builds acid from
[Ref.: #66549]	decanoate ChEBI	-	assimilation
[Ref.: #66549]	dna ChEBI	-	hydrolysis
[Ref.: #66549]	erythritol ChEBI	+	builds acid from
[Ref.: #66549]	esculin ferric citrate	+	builds acid from
[Ref.: #66549]	esculin ferric citrate	-	hydrolysis
[Ref.: #66549]	galactitol ChEBI	-	builds acid from
[Ref.: #66549]	gelatin ChEBI	-	hydrolysis
[Ref.: #66549]	gentiobiose ChEBI	+	builds acid from
[Ref.: #66549]	gluconate ChEBI	-	assimilation
[Ref.: #66549]	glucose ChEBI	-	assimilation
[Ref.: #66549]	glucose ChEBI	-	fermentation
[Ref.: #66549]	glycerol ChEBI	+	builds acid from
[Ref.: #66549]	glycogen ChEBI	-	builds acid from
[Ref.: #66549]	inulin ChEBI	-	builds acid from
[Ref.: #66549]	L-arabinose ChEBI	+	builds acid from
[Ref.: #66549]	L-arabitol ChEBI	+	builds acid from
[Ref.: #66549]	L-fucose ChEBI	+	builds acid from
[Ref.: #66549]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #66549]	L-sorbose ChEBI	-	builds acid from
[Ref.: #66549]	L-xylose ChEBI	+	builds acid from
[Ref.: #66549]	lactose ChEBI	+	builds acid from
[Ref.: #66549]	malate ChEBI	-	assimilation
[Ref.: #66549]	maltose ChEBI	-	assimilation
[Ref.: #66549]	maltose ChEBI	+	builds acid from
[Ref.: #66549]	mannitol ChEBI	-	assimilation
[Ref.: #66549]	mannitol ChEBI	-	fermentation
[Ref.: #66549]	mannose ChEBI	-	assimilation
[Ref.: #66549]	melezitose ChEBI	-	builds acid from
[Ref.: #66549]	melibiose ChEBI	+	builds acid from
[Ref.: #66549]	melibiose ChEBI	-	fermentation
[Ref.: #66549]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #66549]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #66549]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #66549]	myo-inositol ChEBI	+	builds acid from
[Ref.: #66549]	myo-inositol ChEBI	-	fermentation
[Ref.: #66549]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #66549]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #66549]	nitrate ChEBI	+	reduction
[Ref.: #66549]	phenylacetate ChEBI	-	assimilation
[Ref.: #66549]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #66549]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #66549]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #66549]	raffinose ChEBI	-	builds acid from
[Ref.: #66549]	rhamnose ChEBI	-	fermentation
[Ref.: #66549]	ribitol ChEBI	+	builds acid from
[Ref.: #66549]	salicin ChEBI	-	builds acid from
[Ref.: #66549]	sorbitol ChEBI	-	fermentation
[Ref.: #66549]	starch ChEBI	+	builds acid from
[Ref.: #66549]	starch ChEBI	-	hydrolysis
[Ref.: #66549]	sucrose ChEBI	+	builds acid from
[Ref.: #66549]	sucrose ChEBI	-	fermentation
[Ref.: #66549]	trehalose ChEBI	+	builds acid from
[Ref.: #66549]	turanose ChEBI	+	builds acid from
[Ref.: #66549]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66549]	tween 40 ChEBI	+	hydrolysis
[Ref.: #66549]	tween 60 ChEBI	+	hydrolysis
[Ref.: #66549]	tween 80 ChEBI	+	hydrolysis
[Ref.: #66549]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #66549]	acetoin ChEBI	yes
[Ref.: #66549]	hydrogen sulfide ChEBI	no
[Ref.: #66549]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66549]	acid phosphatase	-	3.1.3.2
[Ref.: #66549]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66549]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66549]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66549]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66549]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66549]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66549]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66549]	beta-galactosidase	-	3.2.1.23
[Ref.: #66549]	beta-glucosidase	-	3.2.1.21
[Ref.: #66549]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66549]	catalase	+	1.11.1.6
[Ref.: #66549]	cystine arylamidase	-	3.4.11.3
[Ref.: #66549]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66549]	esterase (C 4)	+
[Ref.: #66549]	esterase Lipase (C 8)	+
[Ref.: #66549]	gelatinase	+
[Ref.: #66549]	leucine arylamidase	+	3.4.11.1
[Ref.: #66549]	lipase (C 14)	+
[Ref.: #66549]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66549]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66549]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66549]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66549]	trypsin	-	3.4.21.4
[Ref.: #66549]	tryptophan deaminase	-	4.1.99.1
[Ref.: #66549]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66549]

Fatty acid	Percentage
C16:1 w6c and/or C16:1 w7c	47.2
C16:0	25.7
C15:0 3OH and/or iso-C16:1 I	6.1
C14:0	5.1
C18:1 w9c	5
C16:0 3OH	2.8
C12:0 3OH	1.4
C18:1 w7c	1.3
C18:0	1.3
C16:0 N alcohol	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66549]	Sample type/isolated from	torch coral Euphyllia glabrescens (in a depth of 10-15 m)
[Ref.: #66549]	Host species	Euphyllia glabrescens
[Ref.: #66549]	Geographic location (country and/or sea, region)	Kenting coast, Pingtung County
[Ref.: #66549]	Country	Taiwan
[Ref.: #66549]	Country ISO 3 Code	TWN
[Ref.: #66549]	Continent	Asia
[Ref.: #66549]	Geographic location	21.8763°/120.7250°
[Ref.: #66549]	Enrichment culture	marine agar 2216
[Ref.: #66549]	Enrichment culture duration	5 days
[Ref.: #66549]	Enrichment culture temperature	25 ̊C
[Ref.: #66549]	Isolation/enrichment procedure	a coral sample (50 g) was collected, sealed into a sterile bag, stored at 4°C and transported to the laboratory within 3-4 h. The coral sample was completely ground in sterile 0.85 % saline in a sterile mortar and pestle, at room temperature. Subsamples (100 µl) of the ground material were spread on marine agar 2216 by using standard dilution plating method.

[Ref.: #67771]	Sample type/isolated from	From coral
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pingtung County
[Ref.: #67771]	Country	Taiwan
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT555401 (>99% sequence identity) for Litoribrevibacter euphylliae from Microbeatlas

Aquatic Samples	180
Soil Samples	13
Animal Samples	20
Plant Samples
Total Samples	213

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66549]	Litoribrevibacter sp. Eup a-2 partial 16S rRNA gene, strain Eup a-2	LT555401	1436	ENA	1834034 tax ID

[Ref.: #66549]

GC-content

49.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #66549]

Culture collection no.

BCRC 81004, LMG 29725, KCTC 52438, Eup a-2

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Litoribrevibacter euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens.	Sheu SY, Xie PB, Sheu DS, Tang SL, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002529	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66549

Shih-Yi Sheu, Pei-Bei Xie, Der-Shyan Sheu, Sen-Lin Tang, Wen-Ming Chen: Litoribrevibacter euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens. IJSEM 68: 432 - 437 2018 ( DOI 10.1099/ijsem.0.002529 , PubMed 29235976 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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