Name: Oceanisphaera avium AMac2203
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159702

Type strain:

Species: Oceanisphaera avium

Strain Designation: AMac2203

Culture col. no.: KCTC 62118, JCM 32207

Strain history: <- Jin-Woo Bae, Kyung Hee Univ.

NCBI tax ID(s): 1903694 (species)

Section

Oceanisphaera avium AMac2203 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from faecal samples from the gut of the cinereous vulture, Aegypius monachus.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Oceanisphaera*
	Species	**Oceanisphaera avium**
	Full Scientific Name (LPSN)	Oceanisphaera avium Sung et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66567]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #66567]	Cell shape	rod-shaped

[Ref.: #66567]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.466

[Ref.: #66567]	Colony color	beige
[Ref.: #66567]	Colony shape	circular
[Ref.: #66567]	Incubation period	2 days
[Ref.: #66567]	Cultivation medium used	modified TYS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66567]

Culture medium

modified TYS agar

[Ref.: #66567]

Culture medium growth

		Temperature
[Ref.: #66567]	optimum	15-25 °C
[Ref.: #66567]	growth	4-30 °C
[Ref.: #67770]	growth	20 °C
[Ref.: #67771]	growth	20-25 °C

[Ref.: #67770]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #66567]			optimum	7-8
[Ref.: #66567]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66567]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66567]		NaCl		optimum	3-5	%(w/v)
[Ref.: #66567]		NaCl		growth	0-8	%(w/v)

[Ref.: #66567]

Observation

The OrthoANI value between strain AMac2203T and O. profunda KCTC 32510T is 77.5 %

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66567]	2-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #66567]	2-oxobutanoate ChEBI	-	assimilation
[Ref.: #66567]	2-oxoglutarate ChEBI	-	assimilation
[Ref.: #66567]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #66567]	acetic acid ChEBI	+	assimilation
[Ref.: #66567]	bromosuccinate ChEBI	+	assimilation
[Ref.: #66567]	D-alanine ChEBI	+	assimilation
[Ref.: #66567]	D-serine ChEBI	-	assimilation
[Ref.: #66567]	esculin ChEBI	+	hydrolysis
[Ref.: #66567]	formate ChEBI	+	assimilation
[Ref.: #66567]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #66567]	glycogen ChEBI	-	assimilation
[Ref.: #66567]	hydroxyproline ChEBI	-	assimilation
[Ref.: #66567]	L-alaninamide ChEBI	+	assimilation
[Ref.: #66567]	L-alanine ChEBI	+	assimilation
[Ref.: #66567]	L-alanylglycine ChEBI	-	assimilation
[Ref.: #66567]	L-asparagine ChEBI	+	assimilation
[Ref.: #66567]	L-aspartate ChEBI	+	assimilation
[Ref.: #66567]	L-glutamate ChEBI	+	assimilation
[Ref.: #66567]	L-histidine ChEBI	+	assimilation
[Ref.: #66567]	L-leucine ChEBI	+	assimilation
[Ref.: #66567]	L-ornithine ChEBI	+	assimilation
[Ref.: #66567]	L-phenylalanine ChEBI	+	assimilation
[Ref.: #66567]	L-proline ChEBI	-	assimilation
[Ref.: #66567]	L-serine ChEBI	+	assimilation
[Ref.: #66567]	L-threonine ChEBI	+	assimilation
[Ref.: #66567]	lactate ChEBI	+	assimilation
[Ref.: #66567]	malate ChEBI	+	assimilation
[Ref.: #66567]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #66567]	monomethyl succinate ChEBI	-	assimilation
[Ref.: #66567]	nitrate ChEBI	-	reduction
[Ref.: #66567]	sodium citrate ChEBI	-	assimilation
[Ref.: #66567]	succinamate ChEBI	-	assimilation
[Ref.: #66567]	succinate ChEBI	+	assimilation
[Ref.: #66567]	tween 40 ChEBI	-	assimilation
[Ref.: #66567]	tween 80 ChEBI	-	assimilation
[Ref.: #66567]	urea ChEBI	-	hydrolysis
[Ref.: #66567]	urocanic acid ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #66567]	catalase	+	1.11.1.6
[Ref.: #66567]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66567]	DNase	-
[Ref.: #66567]	esterase (C 4)	+
[Ref.: #66567]	esterase Lipase (C 8)	+
[Ref.: #66567]	leucine arylamidase	+	3.4.11.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66567]	Sample type/isolated from	faecal samples from the gut of the cinereous vulture, Aegypius monachus
[Ref.: #66567]	Host species	Aegypius monachus
[Ref.: #66567]	Geographic location (country and/or sea, region)	Seoul Grand Park Zoo
[Ref.: #66567]	Country	Republic of Korea
[Ref.: #66567]	Country ISO 3 Code	KOR
[Ref.: #66567]	Continent	Asia
[Ref.: #66567]	Geographic location	37.4227°/127.0220°
[Ref.: #66567]	Isolation/enrichment procedure	Faecal samples were diluted with filtered PBS and inoculated on Lactobacilli MRS agar (Difco), marine agar (Difco), MacConkey agar (BBL), Reasoner's 2A agar (Difco) and tryptic soy agar (Bacto) plates using the standard serial dilution plating method. Then, inoculated agar plates were incubated at 20 and 37°C. Finally, 126 isolates were picked and spread on fresh medium at least three times to obtain pure cultures

[Ref.: #67770]	Sample type/isolated from	Faeces of the cinereous vulture, Aegypius monachus
[Ref.: #67770]	Host species	Aegypius monachus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seoul Grand Park Zoo
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From fecal sample of a cinereous vulture, Aegypius monachus
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host Body-Site	#Gastrointestinal tract	#Rectum
#Host	#Birds	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66567]	Oceanisphaera sp. strain AMac2203 16S ribosomal RNA gene, partial sequence	MH174669	1559	ENA	1903694 tax ID
[Ref.: #66567]	Oceanisphaera sp. strain AMac2203 16S ribosomal RNA gene, partial sequence	MH174670	1547	ENA	1903694 tax ID
[Ref.: #66567]	Oceanisphaera sp. strain AMac2203 16S ribosomal RNA gene, partial sequence	MH174671	1546	ENA	1903694 tax ID
[Ref.: #66567]	Oceanisphaera sp. strain AMac2203 16S ribosomal RNA gene, partial sequence	MH174672	1559	ENA	1903694 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceanisphaera avium AMac2203	GCA_002157875	complete	GenBank	1903694 tax ID	*

[Ref.: #66567]

GC-content

47.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oceanisphaera avium AMac2203 NCBI: GCA_002157875.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oceanisphaera avium AMac2203 NCBI: GCA_002157875.1
[Ref.: #69480]	flagellated	yes	72.615	no
[Ref.: #69480]	gram-positive	no	98.884	no
[Ref.: #69480]	anaerobic	no	99.057	no
[Ref.: #69480]	aerobic	yes	80.328	no
[Ref.: #69480]	halophile	yes	80.614	no
[Ref.: #69480]	spore-forming	no	96.307	no
[Ref.: #69480]	thermophile	no	99.372	yes
[Ref.: #69480]	glucose-util	yes	72.35	no
[Ref.: #69480]	motile	yes	92.16	yes
[Ref.: #69480]	glucose-ferment	yes	53.781	no

Availability in culture collections External links

[Ref.: #66567]

Culture collection no.

KCTC 62118, JCM 32207

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanisphaera avium sp. nov., isolated from the gut of the cinereous vulture, Aegypius monachus.	Sung H, Kim HS, Lee JY, Kang W, Kim PS, Hyun DW, Tak EJ, Jung MJ, Yun JH, Kim MS, Shin NR, Whon TW, Rho JR, Park SD, Shim HE, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002797	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66567

Hojun Sung, Hyun Sik Kim, June-Young Lee, Woorim Kang, Pil Soo Kim, Dong-Wook Hyun, Euon Jung Tak, Mi-Ja Jung, Ji-Hyun Yun, Min-Soo Kim, Na-Ri Shin, Tae Woong Whon, Jeong Rae Rho, Sun Duk Park, Hyung Eun Shim, Jin-Woo Bae: Oceanisphaera avium sp. nov., isolated from the gut of the cinereous vulture, Aegypius monachus. IJSEM 68: 2068 - 2073 2018 ( DOI 10.1099/ijsem.0.002797 , PubMed 29722644 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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