Name: Muribaculum gordoncarteri 25C
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159692

Type strain:

Species: Muribaculum gordoncarteri

Strain Designation: 25C, TLL-A4

Culture col. no.: DSM 108194, KCTC 15770

Strain history: <- Sou Miyake, Temasek life Sciences Laboratory

NCBI tax ID(s): 2530390 (species)

SI-ID 397190

DSM 108194

Other strains from Muribaculum gordoncarteri

M. gordoncarteri NM65_B17, DSM 110163

Section

Muribaculum gordoncarteri 25C is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from Fecal pellet from C57BL/6J mouse.

rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Muribaculaceae*
	Genus	*Muribaculum*
	Species	**Muribaculum gordoncarteri**
	Full Scientific Name (LPSN)	Muribaculum gordoncarteri Miyake et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #67771]	Cell shape	rod-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66543]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #66543]

Culture medium growth

[Ref.: #66543]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66543]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66543]			growth	37 °C
[Ref.: #67771]			growth	37 °C

[Ref.: #66543]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.714

[Ref.: #69480]	Ability of spore formation	no Confidence in %100
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67771]

Observation

quinones: MK-10, MK-11, MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66543]	Sample type/isolated from	Fecal pellet from C57BL/6J mouse
[Ref.: #66543]	Geographic location (country and/or sea, region)	Singapore
[Ref.: #66543]	Country	Singapore
[Ref.: #66543]	Country ISO 3 Code	SGP
[Ref.: #66543]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From fecal pellet from C57BL/6J mouse
[Ref.: #67771]	Country	Singapore
[Ref.: #67771]	Country ISO 3 Code	SGP
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Caecal content
#Host	#Mammals	#Muridae (Mouse/Rat)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MK521455 (>99% sequence identity) for Muribaculum gordoncarteri subclade from Microbeatlas

Aquatic Samples	883
Soil Samples	835
Animal Samples	37983
Plant Samples	191
Total Samples	39892

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Muribaculum sp. TLL-A4 16S ribosomal RNA gene, partial sequence	MK521455	1544	ENA	2530390 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Muribaculum gordoncarteri TLL-A4	GCA_004803695	chromosome	GenBank	2530390 tax ID	*
[Ref.: #66792]	Muribaculum sp. TLL-A4	2530390.3	complete	PATRIC	2530390 tax ID	*

[Ref.: #67771]

GC-content

49.47 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Muribaculum sp. TLL-A4 PATRIC: 2530390.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Muribaculum sp. TLL-A4 PATRIC: 2530390.3
[Ref.: #69480]	motile	no	93.169	no
[Ref.: #69480]	gram-positive	no	97.734	yes
[Ref.: #69480]	anaerobic	yes	98.701	yes
[Ref.: #69480]	aerobic	no	98.089	no
[Ref.: #69480]	halophile	no	85.017	no
[Ref.: #69480]	spore-forming	no	96.005	no
[Ref.: #69480]	glucose-util	yes	86.144	no
[Ref.: #69480]	flagellated	no	97.517	no
[Ref.: #69480]	thermophile	no	99.243	yes
[Ref.: #69480]	glucose-ferment	yes	58.299	no

Availability in culture collections External links

[Ref.: #66543]

Culture collection no.

DSM 108194, KCTC 15770

[Ref.: #112162]

SI-ID 397190

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muribaculum gordoncarteri sp. nov., an anaerobic bacterium from the faeces of C57BL/6J mice.	Miyake S, Ding Y, Soh M, Low A, Seedorf H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004338	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66543

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108194

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112162

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397190.1 )

* These data were automatically processed and therefore are not curated

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Muribaculum sp. TLL-A4

Muribaculum sp. TLL-A4

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