Name: Arundinibacter roseus DMA-K-7a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159686

Type strain:

Species: Arundinibacter roseus

Strain Designation: DMA-K-7a

Culture col. no.: DSM 106737, NCAIM B.02641

Strain history: <- E. Toth, Eötvös Loránd Univ. Budapest, Hungary; DMA-K-7a <- S. Szuróczki

NCBI tax ID(s): 2070510 (species)

SI-ID 400498

DSM 106737

Section

Arundinibacter roseus DMA-K-7a is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from lake water.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cytophagaceae*
	Genus	*Arundinibacter*
	Species	**Arundinibacter roseus**
	Full Scientific Name (LPSN)	Arundinibacter roseus Szuróczki et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67967]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #67967]	Cell length	2.50-5.92 µm

[Ref.: #67967]	Cell width	0.35-0.62 µm

[Ref.: #67967]	Cell shape	rod-shaped

[Ref.: #67967]	Motility	no

[Ref.: #67967]	Colony color	rosy
[Ref.: #67967]	Colony shape	circular
[Ref.: #67967]	Cultivation medium used	Reasoner's 2A agar (R2A)

[Ref.: #67967]	Pigment production	yes
[Ref.: #67967]	Pigment name	Carotenoid pigment
[Ref.: #67967]	Pigment production	no
[Ref.: #67967]	Pigment name	Flexirubin type pigments

Multimedia content

[Ref.: #66537]

Caption:

DSM 106737 on medium 830 at 28 °C

[Ref.: #66537]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66537]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #66537]	growth	28 °C
[Ref.: #67967]	growth	5-37 °C
[Ref.: #67967]	optimum	15-35 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #67967]			optimum	8.0-9.0
[Ref.: #67967]			growth	7.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67967]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.908
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67967]		NaCl		growth	0.0-4.0	%
[Ref.: #67967]		NaCl		optimum	0	%

[Ref.: #67967]	Observation	The predominant quinone is MK-7
[Ref.: #67967]	Observation	The major polar lipids are phosphatidylethanolamine, phosphatidylserine, an unknown aminolipid, an nunknown glycolipid and unknown lipids
[Ref.: #67967]	Observation	Hugh-Leifson negative

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	amygdalin ChEBI	-	builds acid from
[Ref.: #67967]	arbutin ChEBI	-	builds acid from
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #67967]	cellobiose ChEBI	-	builds acid from
[Ref.: #67967]	D-arabinose ChEBI	-	builds acid from
[Ref.: #67967]	D-arabitol ChEBI	-	builds acid from
[Ref.: #67967]	D-fructose ChEBI	-	builds acid from
[Ref.: #67967]	D-fucose ChEBI	-	builds acid from
[Ref.: #67967]	D-galactose ChEBI	-	builds acid from
[Ref.: #67967]	D-glucose ChEBI	-	builds acid from
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #67967]	D-lyxose ChEBI	-	builds acid from
[Ref.: #67967]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	D-mannose ChEBI	-	builds acid from
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	D-ribose ChEBI	-	builds acid from
[Ref.: #67967]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67967]	D-tagatose ChEBI	-	builds acid from
[Ref.: #67967]	D-xylose ChEBI	-	builds acid from
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	erythritol ChEBI	-	builds acid from
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #67967]	esculin ferric citrate	+	hydrolysis
[Ref.: #67967]	esculin ferric citrate	+	builds acid from
[Ref.: #67967]	galactitol ChEBI	-	builds acid from
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #67967]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	glycerol ChEBI	-	builds acid from
[Ref.: #67967]	glycogen ChEBI	-	builds acid from
[Ref.: #67967]	inulin ChEBI	-	builds acid from
[Ref.: #67967]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	L-arabitol ChEBI	-	builds acid from
[Ref.: #67967]	L-arginine ChEBI	-	hydrolysis
[Ref.: #67967]	L-fucose ChEBI	-	builds acid from
[Ref.: #67967]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #67967]	L-sorbose ChEBI	-	builds acid from
[Ref.: #67967]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #67967]	L-xylose ChEBI	-	builds acid from
[Ref.: #67967]	lactose ChEBI	-	builds acid from
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	maltose ChEBI	-	builds acid from
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	melezitose ChEBI	-	builds acid from
[Ref.: #67967]	melibiose ChEBI	-	builds acid from
[Ref.: #67967]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #67967]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #67967]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #67967]	myo-inositol ChEBI	-	builds acid from
[Ref.: #67967]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #67967]	nitrate ChEBI	-	anaerobic growth
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #67967]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #67967]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #67967]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #67967]	raffinose ChEBI	-	builds acid from
[Ref.: #67967]	ribitol ChEBI	-	builds acid from
[Ref.: #67967]	salicin ChEBI	-	builds acid from
[Ref.: #67967]	starch ChEBI	-	builds acid from
[Ref.: #67967]	sucrose ChEBI	-	builds acid from
[Ref.: #67967]	trehalose ChEBI	-	builds acid from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #67967]	turanose ChEBI	-	builds acid from
[Ref.: #67967]	tween 20 ChEBI	+	hydrolysis
[Ref.: #67967]	tween 40 ChEBI	-	hydrolysis
[Ref.: #67967]	tween 60 ChEBI	+	hydrolysis
[Ref.: #67967]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #67967]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67967]	hydrogen sulfide ChEBI	no
[Ref.: #67967]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #67967]	acid phosphatase	+	3.1.3.2
[Ref.: #67967]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67967]	alpha-Amylase	+	3.2.1.1
[Ref.: #67967]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67967]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67967]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #67967]	alpha-glucosidase	+	3.2.1.20
[Ref.: #67967]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #67967]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #67967]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #67967]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67967]	caseinase	-	3.4.21.50
[Ref.: #67967]	catalase	+	1.11.1.6
[Ref.: #67967]	cellulase	-	3.2.1.4
[Ref.: #67967]	chitinase	-	3.2.1.14
[Ref.: #67967]	cystine arylamidase	+	3.4.11.3
[Ref.: #67967]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #67967]	DNase	-
[Ref.: #67967]	esterase (C 4)	+
[Ref.: #67967]	esterase Lipase (C 8)	+/-
[Ref.: #67967]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #67967]	leucine arylamidase	+	3.4.11.1
[Ref.: #67967]	lipase (C 14)	-
[Ref.: #67967]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #67967]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67967]	phosphatase	+
[Ref.: #67967]	trypsin	+	3.4.21.4
[Ref.: #67967]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #67967]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #66537]	24671	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66537]	Sample type/isolated from	lake water
[Ref.: #66537]	Geographic location (country and/or sea, region)	Lake Fertö (47° 42' N, 16° 41' 59.9'' E)
[Ref.: #66537]	Country	Hungary
[Ref.: #66537]	Country ISO 3 Code	HUN
[Ref.: #66537]	Continent	Europe

[Ref.: #67967]	Sample type/isolated from	water sample collected from Kis-Herlakni inner pond (Lake Ferto/Neusiedler See), 115m above sea level, predominating ions are hydrogen carbonate, sodium, magnesium and sulphate
[Ref.: #67967]	Sampling date	2015-11-10
[Ref.: #67967]	Geographic location (country and/or sea, region)	Kis-Herlakni
[Ref.: #67967]	Country	Hungary
[Ref.: #67967]	Country ISO 3 Code	HUN
[Ref.: #67967]	Continent	Europe
[Ref.: #67967]	Geographic location	47.6800°/16.7000°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66537]	Cytophagaceae bacterium strain DMA-K-7a 16S ribosomal RNA gene, partial sequence	MG799130	1449	ENA	2070510 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67967]	Arundinibacter roseus DMA-K-7a	GCA_004348825	scaffold	GenBank	2070510 tax ID
[Ref.: #66792]	Cytophaga sp. DMA-K-7a strain DMA-k-7a	2070510.3	wgs	PATRIC	2070510 tax ID	*
[Ref.: #66792]	Arundinibacter roseus DMA-k-7a	2881096153	draft	JGI IMG/M	2070510 tax ID	*

[Ref.: #67967]

GC-content

45.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arundinibacter roseus DMA-K-7a NCBI: GCA_004348825.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cytophaga sp. DMA-K-7a strain DMA-k-7a PATRIC: 2070510.3
[Ref.: #69480]	motile	no	93.045	yes
[Ref.: #69480]	gram-positive	no	97.994	yes
[Ref.: #69480]	anaerobic	no	98.754	yes
[Ref.: #69480]	aerobic	yes	88.815	yes
[Ref.: #69480]	halophile	no	94.545	no
[Ref.: #69480]	spore-forming	no	95.614	no
[Ref.: #69480]	glucose-util	yes	85.086	no
[Ref.: #69480]	flagellated	no	97.568	yes
[Ref.: #69480]	thermophile	no	98.623	yes
[Ref.: #69480]	glucose-ferment	no	88.163	yes

Availability in culture collections External links

[Ref.: #66537]

Culture collection no.

DSM 106737, NCAIM B.02641

[Ref.: #112156]

SI-ID 400498

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arundinibacter roseus gen. nov., sp. nov., a new member of the family Cytophagaceae.	Szuroczki S, Khayer B, Sproer C, Toumi M, Szabo A, Felfoldi T, Schumann P, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003436	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66537

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106737

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67967

S. Szuróczki, B. Khayer, C. Spröer, M. Toumi, A. Szabó, T. Felföldi, P. Schumann, E. Tóth: Arundinibacter roseus gen. nov., sp. nov., a new member of the family Cytophagaceae. IJSEM 69: 2076 - 2081 2019 ( DOI 10.1099/ijsem.0.003436 )

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112156

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400498.1 )

* These data were automatically processed and therefore are not curated

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Arundinibacter roseus DMA-K-7a

Cytophaga sp. DMA-K-7a strain DMA-k-7a

Change proposal

Change proposal