Arundinibacter roseus (DSM 106737, NCAIM B.02641, DMA-K-7a)

Name: Arundinibacter roseus (DSM 106737, NCAIM B.02641, DMA-K-7a)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159686

Type strain

Strain Designation DMA-K-7a

Culture col. no. DSM 106737 NCAIM B.02641 DMA-K-7a

NCBI tax ID(s) 2070510

Special Collections DSMZ Literature strains

Links

Arundinibacter roseus DMA-K-7a is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from lake water.

Gram-negative rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400498

NCAIM B.02641,DSM 106737

@ref 20215

Last LPSN update 2025-12-16 10:08:19

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Spirosomataceae

Genus Arundinibacter

Species Arundinibacter roseus

Full scientific name Arundinibacter roseus Szuróczki et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
67967	negative	2.50-5.92 µm	0.35-0.62 µm	rod-shaped
125438
125438	negative
125439	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
67967	rosy	circular	Reasoner's 2A agar (R2A)

Pigmentation

@ref	Production	Name
67967		Carotenoid pigment
67967		Flexirubin type pigments

Multimedia

@ref:	66537
multimedia content:	DSM_106737.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_106737.jpg
caption:	DSM 106737 on medium 830 at 28 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66537	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66537	positive	growth	28	mesophilic
67967	positive	growth	5-37
67967	positive	optimum	15-35

Culture pH

@ref	Ability	Type	PH
67967	positive	optimum	8.0-9.0
67967	positive	growth	7.0-11.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
67967	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67967	NaCl	positive	growth	0.0-4.0 %
67967	NaCl	positive	optimum	0 %

Observation

@ref	Observation
67967	The predominant quinone is MK-7
67967	The major polar lipids are phosphatidylethanolamine, phosphatidylserine, an unknown aminolipid, an nunknown glycolipid and unknown lipids
67967	Hugh-Leifson negative

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
67967	27613 ChEBI	amygdalin	-	builds acid from
67967	18305 ChEBI	arbutin	-	builds acid from
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
67967	17057 ChEBI	cellobiose	-	builds acid from
67967	17108 ChEBI	D-arabinose	-	builds acid from
67967	18333 ChEBI	D-arabitol	-	builds acid from
67967	15824 ChEBI	D-fructose	-	builds acid from
67967	28847 ChEBI	D-fucose	-	builds acid from
67967	12936 ChEBI	D-galactose	-	builds acid from
67967	17634 ChEBI	D-glucose	-	builds acid from
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
67967	62318 ChEBI	D-lyxose	-	builds acid from
67967	16899 ChEBI	D-mannitol	-	builds acid from
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
67967	16024 ChEBI	D-mannose	-	builds acid from
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
67967	16988 ChEBI	D-ribose	-	builds acid from
67967	17924 ChEBI	D-sorbitol	-	builds acid from
67967	16443 ChEBI	D-tagatose	-	builds acid from
67967	65327 ChEBI	D-xylose	-	builds acid from
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
67967	17113 ChEBI	erythritol	-	builds acid from
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
67967		esculin ferric citrate	+	hydrolysis
67967		esculin ferric citrate	+	builds acid from
67967	16813 ChEBI	galactitol	-	builds acid from
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
67967	28066 ChEBI	gentiobiose	-	builds acid from
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
67967	17754 ChEBI	glycerol	-	builds acid from
67967	28087 ChEBI	glycogen	-	builds acid from
67967	15443 ChEBI	inulin	-	builds acid from
67967	30849 ChEBI	L-arabinose	-	builds acid from
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
67967	18403 ChEBI	L-arabitol	-	builds acid from
67967	16467 ChEBI	L-arginine	-	hydrolysis
67967	18287 ChEBI	L-fucose	-	builds acid from
67967	62345 ChEBI	L-rhamnose	+	builds acid from
67967	17266 ChEBI	L-sorbose	-	builds acid from
67967	17895 ChEBI	L-tyrosine	-	hydrolysis
67967	65328 ChEBI	L-xylose	-	builds acid from
67967	17716 ChEBI	lactose	-	builds acid from
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
67967	17306 ChEBI	maltose	-	builds acid from
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
67967	6731 ChEBI	melezitose	-	builds acid from
67967	28053 ChEBI	melibiose	-	builds acid from
67967	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
67967	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
67967	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
67967	17268 ChEBI	myo-inositol	-	builds acid from
67967	59640 ChEBI	N-acetylglucosamine	-	builds acid from
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
67967	17632 ChEBI	nitrate	-	anaerobic growth
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
67967		potassium 2-dehydro-D-gluconate	-	builds acid from
67967		potassium 5-dehydro-D-gluconate	-	builds acid from
67967	32032 ChEBI	potassium gluconate	-	builds acid from
67967	16634 ChEBI	raffinose	-	builds acid from
67967	15963 ChEBI	ribitol	-	builds acid from
67967	17814 ChEBI	salicin	-	builds acid from
67967	28017 ChEBI	starch	-	builds acid from
67967	17992 ChEBI	sucrose	-	builds acid from
67967	27082 ChEBI	trehalose	-	builds acid from
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
67967	32528 ChEBI	turanose	-	builds acid from
67967	53424 ChEBI	tween 20	+	hydrolysis
67967	53423 ChEBI	tween 40	-	hydrolysis
67967	53425 ChEBI	tween 60	+	hydrolysis
67967	53426 ChEBI	tween 80	+	hydrolysis
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
67967	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
67967	16136 ChEBI	hydrogen sulfide
67967	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
67967	acid phosphatase	+	3.1.3.2
67967	alkaline phosphatase	+	3.1.3.1
67967	alpha-Amylase	+	3.2.1.1
67967	alpha-chymotrypsin	-	3.4.21.1
67967	alpha-fucosidase	-	3.2.1.51
67967	alpha-galactosidase	+/-	3.2.1.22
67967	alpha-glucosidase	+	3.2.1.20
67967	alpha-mannosidase	+/-	3.2.1.24
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
67967	beta-galactosidase	+/-	3.2.1.23
67967	beta-glucosidase	+/-	3.2.1.21
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
67967	beta-glucuronidase	-	3.2.1.31
67967	caseinase	-	3.4.21.50
67967	catalase	+	1.11.1.6
67967	cellulase	-	3.2.1.4
67967	chitinase	-	3.2.1.14
67967	cystine arylamidase	+	3.4.11.3
67967	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
67967	DNase	-
67967	esterase (C 4)	+
67967	esterase Lipase (C 8)	+/-
67967	gelatinase	-
68369	gelatinase	-		from API 20NE
67967	leucine arylamidase	+	3.4.11.1
67967	lipase (C 14)	-
67967	N-acetyl-beta-glucosaminidase	+	3.2.1.52
67967	naphthol-AS-BI-phosphohydrolase	+
67967	phosphatase	+
67967	trypsin	+	3.4.21.4
67967	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
67967	valine arylamidase	+

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
66537	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66537	lake water	Lake Fertö (47° 42' N, 16° 41' 59.9'' E)	Hungary	HUN	Europe
67967	water sample collected from Kis-Herlakni inner pond (Lake Ferto/Neusiedler See), 115m above sea level, predominating ions are hydrogen carbonate, sodium, magnesium and sulphate	Kis-Herlakni	Hungary	HUN	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67967	ASM434882v1 assembly for Arundinibacter roseus DMA-K-7a	scaffold	GCA_004348825	2070510.3	2881096153	2070510	69.23

Genome browser: GCA_004348825

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66537	Arundinibacter roseus strain DMA-K-7a 16S ribosomal RNA gene, partial sequence	MG799130	1449		2070510

GC content

@ref	GC-content (mol%)	Method
67967	45.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arundinibacter roseus DMA-K-7a
NCBI: GCA_004348825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	no	75.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cytophaga sp. DMA-K-7a strain DMA-k-7a
PATRIC: 2070510.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.34	yes
125438	anaerobic	anaerobicⓘ	no	92.76	no
125438	spore-forming	spore-formingⓘ	no	85.54	no
125438	aerobic	aerobicⓘ	yes	87.87	yes
125438	thermophilic	thermophileⓘ	no	94.61	yes
125438	flagellated	motile2+ⓘ	no	90.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arundinibacter roseus gen. nov., sp. nov., a new member of the family Cytophagaceae.	Szuroczki S, Khayer B, Sproer C, Toumi M, Szabo A, Felfoldi T, Schumann P, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003436	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66537	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106737
#67967	S. Szuróczki, B. Khayer, C. Spröer, M. Toumi, A. Szabó, T. Felföldi, P. Schumann, E. Tóth: Arundinibacter roseus gen. nov., sp. nov., a new member of the family Cytophagaceae. IJSEM 69: 2076 - 2081 2019 ( DOI 10.1099/ijsem.0.003436 )
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arundinibacter roseus (DSM 106737, NCAIM B.02641, DMA-K-7a)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004348825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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