Name: Rhizobium aquaticum SA-276
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159681

Type strain:

Species: Rhizobium aquaticum

Strain Designation: SA-276

Culture col. no.: DSM 29780, JCM 31760

Strain history: T. Felföldi; Eötvös Loránd Univ., Hungary; SA-276.

NCBI tax ID(s): 1549636 (species)

SI-ID 396737

DSM 29780

Section

Rhizobium aquaticum SA-276 is a psychrophilic bacterium that was isolated from crater lake.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium aquaticum**
	Full Scientific Name (LPSN)	Rhizobium aquaticum Máthé et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66532]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #66532]

Culture medium growth

[Ref.: #66532]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66532]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66532]			growth	20 °C
[Ref.: #67770]			growth	21 °C

[Ref.: #66532]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10, Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #66532]	24189	-	-	-	-	+	+	-	+	+	-	+	+	+	+	+/-	-	+/-	+	+	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66532]	Sample type/isolated from	crater lake
[Ref.: #66532]	Geographic location (country and/or sea, region)	Lake St. Ana
[Ref.: #66532]	Country	Romania
[Ref.: #66532]	Country ISO 3 Code	ROU
[Ref.: #66532]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Water of Lake St. Ana, a crater lake in the Ciomad Mountains
[Ref.: #67770]	Geographic location (country and/or sea, region)	Harghita County
[Ref.: #67770]	Country	Romania
[Ref.: #67770]	Country ISO 3 Code	ROU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66532]	Rhizobium aquaticum strain SA-276 16S ribosomal RNA gene, partial sequence	KM083136	1408	ENA	1549636 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium aquaticum DSM 29780	2928412209	draft	JGI IMG/M	1549636 tax ID	*

[Ref.: #67770]

GC-content

60.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #66532]

Culture collection no.

DSM 29780, JCM 31760

[Ref.: #112152]

SI-ID 396737

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A new Rhizobium species isolated from the water of a crater lake, description of Rhizobium aquaticum sp. nov.	Mathe I, Toth E, Mentes A, Szabo A, Marialigeti K, Schumann P, Felfoldi T	Antonie Van Leeuwenhoek	10.1007/s10482-018-1110-0	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66532

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29780

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#112152

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396737.1 )

* These data were automatically processed and therefore are not curated

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