Rhodoluna limnophila (DSM 107805, JCM 32927, 36A-HellB)

Name: Rhodoluna limnophila (DSM 107805, JCM 32927, 36A-HellB)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159680

Type strain

Strain Designation 36A-HellB

Culture col. no. DSM 107805 JCM 32927 36A-HellB

NCBI tax ID(s) 232537

Special Collections DSMZ JCM

History DSMZ <- M. Hahn, University of Innsbruck, Research Institute for Limnology; 36A-HellB <- J. Schmidt JCM <-- M. W. Hahn; Res. Dept. for Limnol., Univ. of Innsbruck, Austria; 36A-HELLB.

Links

Rhodoluna limnophila 36A-HellB is a bacterium that was isolated from freshwater.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398722

JCM 32927,DSM 107805

@ref 20215

Last LPSN update 2026-05-29 08:44:15

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Rhodoluna

Species Rhodoluna limnophila

Full scientific name Rhodoluna limnophila Pitt et al. 2019

Synonyms (1)

"Candidatus Rhodoluna limnophila"

BacDive ID	Other strains from **Rhodoluna limnophila** (2)	Type strain
159679	R. limnophila 27D-LEPI, DSM 107804, JCM 32926 (type strain)
159678	R. limnophila CM 32925, 1B-Mac, DSM 107802, JCM 32925

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	negative	98.868
125438		93.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66531	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66531	positive	growth	22
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.79

Spore formation

@ref	Spore formation	Confidence
125439		99.488
125438		90.553

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66531	freshwater	Hellbrunner Bach, Salzburg	Austria	AUT	Europe
67770	Water from Hellbrunnerbach, a small freshwater creek running through the city		Austria	AUT	Europe

Taxonmaps

69479

Global distribution of 16S sequence MK951676 (>99% sequence identity) for Rhodoluna limnophila subclade from Microbeatlas

Aquatic Samples	2284
Soil Samples	110
Animal Samples	677
Plant Samples	16
Total Samples	3087

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM584538v1 assembly for Rhodoluna limnophila 36A-HELLB	complete	GCA_005845385	232537.5	2816332247	232537	98.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66531	Rhodoluna limnophila strain 36A-HELLB 16S ribosomal RNA gene, partial sequence	MK951676	1364		232537

GC content

@ref	GC-content (mol%)	Method
67770	53.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM584538v1 assembly for Rhodoluna limnophila 36A-HELLB
NCBI: GCA_005845385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.79	no
125439	gram_stain	BacteriaNetⓘ	negative	98.87	no
125439	spore_formation	BacteriaNetⓘ	no	99.49	no
125439	motility	BacteriaNetⓘ	yes	66.68	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodoluna limnophila 36A-HELLB
NCBI: GCA_005845385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.16	no
125438	anaerobic	anaerobicⓘ	no	89.97	no
125438	aerobic	aerobicⓘ	yes	66.83	no
125438	spore-forming	spore-formingⓘ	no	90.55	no
125438	thermophilic	thermophileⓘ	no	87.97	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodoluna limnophila sp. nov., a bacterium with 1.4 Mbp genome size isolated from freshwater habitats located in Salzburg, Austria.	Pitt A, Schmidt J, Koll U, Hahn MW.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003720	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66531	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107805
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodoluna limnophila (DSM 107805, JCM 32927, 36A-HellB)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_005845385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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