Name: Rhodoluna limnophila 36A-HellB
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159680

Type strain:

Species: Rhodoluna limnophila

Strain Designation: 36A-HellB

Culture col. no.: DSM 107805, JCM 32927

Strain history: M. W. Hahn; Res. Dept. for Limnol., Univ. of Innsbruck, Austria; 36A-HELLB.

NCBI tax ID(s): 232537 (species)

SI-ID 398722

DSM 107805

Other strains from Rhodoluna limnophila

R. limnophila 27D-LEPI, DSM 107804, JCM 32926 (type strain)
R. limnophila CM 32925, 1B-Mac, DSM 107802, JCM ...

Section

Rhodoluna limnophila 36A-HellB is a psychrophilic bacterium that was isolated from freshwater.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Rhodoluna*
	Species	**Rhodoluna limnophila**
	Full Scientific Name (LPSN)	Rhodoluna limnophila Pitt et al. 2019

Synonym

"Candidatus Rhodoluna limnophila"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66531]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #66531]

Culture medium growth

[Ref.: #66531]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66531]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66531]			growth	22 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #66531]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66531]	Sample type/isolated from	freshwater
[Ref.: #66531]	Geographic location (country and/or sea, region)	Hellbrunner Bach, Salzburg
[Ref.: #66531]	Country	Austria
[Ref.: #66531]	Country ISO 3 Code	AUT
[Ref.: #66531]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Water from Hellbrunnerbach, a small freshwater creek running through the city
[Ref.: #67770]	Country	Austria
[Ref.: #67770]	Country ISO 3 Code	AUT
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MK951676 (>99% sequence identity) for Rhodoluna limnophila subclade from Microbeatlas

Aquatic Samples	2284
Soil Samples	110
Animal Samples	677
Plant Samples	16
Total Samples	3087

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66531]	Candidatus Rhodoluna limnophila strain 36A-HELLB 16S ribosomal RNA gene, partial sequence	MK951676	1364	ENA	232537 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodoluna limnophila 36A-HELLB	GCA_005845385	complete	GenBank	232537 tax ID	*

[Ref.: #67770]

GC-content

53.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodoluna limnophila 36A-HELLB NCBI: GCA_005845385.1
[Ref.: #69480]	motile	no	94.561	no
[Ref.: #69480]	flagellated	no	97.322	no
[Ref.: #69480]	gram-positive	yes	84.751	no
[Ref.: #69480]	anaerobic	no	98.499	no
[Ref.: #69480]	aerobic	yes	79.935	no
[Ref.: #69480]	halophile	no	88.704	no
[Ref.: #69480]	spore-forming	no	97.377	no
[Ref.: #69480]	glucose-util	yes	88.953	no
[Ref.: #69480]	thermophile	no	84.219	yes
[Ref.: #69480]	glucose-ferment	no	77.013	no

Availability in culture collections External links

[Ref.: #66531]

Culture collection no.

DSM 107805, JCM 32927

[Ref.: #112151]

SI-ID 398722

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66531

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107805

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112151

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398722.1 )

* These data were automatically processed and therefore are not curated

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Rhodoluna limnophila 36A-HELLB

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