Anaerobutyricum soehngenii (DSM 109238, BSM-383-APC-4H)

Name: Anaerobutyricum soehngenii (DSM 109238, BSM-383-APC-4H)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159670

Type strain

Strain Designation BSM-383-APC-4H

Culture col. no. DSM 109238 BSM-383-APC-4H

NCBI tax ID(s) 105843

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

Links

Anaerobutyricum soehngenii BSM-383-APC-4H is a bacterium that was isolated from feces; pig ,5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408194

DSM 109238

@ref 20215

Last LPSN update 2026-05-29 08:44:15

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Anaerobutyricum

Species Anaerobutyricum soehngenii

Full scientific name Anaerobutyricum soehngenii Shetty et al. 2018

BacDive ID	Other strains from **Anaerobutyricum soehngenii** (1)	Type strain
5429	A. soehngenii L2-7, DSM 17630, KCTC 15707 (type strain)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66521	BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c)		Medium recipe at MediaDive	Name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c) Composition: Brain heart infusion 37.0 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66521	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	90.892
125439	facultative anaerobe	95.84

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66521	feces; pig ,5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537554 (>99% sequence identity) for Lachnospiraceae from Microbeatlas

Aquatic Samples	0
Soil Samples	0
Animal Samples	126
Plant Samples	0
Total Samples	126

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969716v1 assembly for Anaerobutyricum soehngenii BSM-383-APC-4H	contig	GCA_009697165	105843.3	8065358533	105843	61.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66521	Anaerobutyricum soehngenii strain DSM 109238 16S ribosomal RNA gene, partial sequence	MN537554	1478		105843

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969716v1 assembly for Anaerobutyricum soehngenii BSM-383-APC-4H
BV-BRC: 105843.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.84	no
125439	gram_stain	BacteriaNetⓘ	variable	62.43	no
125439	motility	BacteriaNetⓘ	yes	65.43	no
125439	spore_formation	BacteriaNetⓘ	yes	56.78	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerobutyricum soehngenii strain BSM-383-APC-4H
PATRIC: 105843.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	79.04	no
125438	anaerobic	anaerobicⓘ	yes	90.89	no
125438	spore-forming	spore-formingⓘ	no	51.04	no
125438	aerobic	aerobicⓘ	no	96.74	no
125438	thermophilic	thermophileⓘ	no	95.52	no
125438	flagellated	motile2+ⓘ	no	75.41	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66521	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109238
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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