Trinickia diaoshuihuensis (DSM 106065, CCTCC AA 2018003, NEAU-SY24)

Name: Trinickia diaoshuihuensis (DSM 106065, CCTCC AA 2018003, NEAU-SY24)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159661

Type strain

Strain Designation NEAU-SY24

Culture col. no. DSM 106065 CCTCC AA 2018003 NEAU-SY24

NCBI tax ID(s) 2292265

Special Collections DSMZ Literature strains

Links

Trinickia diaoshuihuensis NEAU-SY24 is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from soil.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404338

DSM 106065

@ref 20215

Last LPSN update 2025-12-16 10:08:18

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Trinickia

Species Trinickia diaoshuihuensis

Full scientific name Trinickia diaoshuihuensis Fu et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
67792	negative	1.9-2.1 µm	0.5-0.7 µm	rod-shaped
125439	negative					96.1

Colony morphology

@ref	Colony color	Colony shape	Medium used
67792	yellow	circular	Trypticase Soy Agar (TSA)

Multimedia

@ref:	66511
multimedia content:	DSM_106065.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_106065.jpg
caption:	DSM 106065 on medium 987 at 28 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66511	ISP2 MEDIUM (DSMZ Medium 987)		Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
66511	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66511	positive	growth	28	mesophilic
67792	positive	growth	10-40
67792	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH
67792	positive	optimum	6
67792	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67792	aerobe
125439	aerobe	98

Spore formation

@ref	Spore formation	Confidence
67792
125439		93.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67792	NaCl	positive	growth	0-1 %(w/v)
67792	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
67792	27613 ChEBI	amygdalin	-	builds acid from
67792	18305 ChEBI	arbutin	-	builds acid from
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
67792	17057 ChEBI	cellobiose	-	builds acid from
67792	16947 ChEBI	citrate	+	assimilation
67792	16919 ChEBI	creatine	+	carbon source
67792	16919 ChEBI	creatine	+	energy source
67792	17108 ChEBI	D-arabinose	-	builds acid from
67792	18333 ChEBI	D-arabitol	+	builds acid from
67792	15824 ChEBI	D-fructose	+	builds acid from
67792	15824 ChEBI	D-fructose	+	carbon source
67792	15824 ChEBI	D-fructose	+	energy source
67792	28847 ChEBI	D-fucose	+	builds acid from
67792	12936 ChEBI	D-galactose	+	builds acid from
67792	12936 ChEBI	D-galactose	+	carbon source
67792	12936 ChEBI	D-galactose	+	energy source
67792	17634 ChEBI	D-glucose	+	builds acid from
67792	17634 ChEBI	D-glucose	+	carbon source
67792	17634 ChEBI	D-glucose	+	energy source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
67792	62318 ChEBI	D-lyxose	-	builds acid from
67792	16899 ChEBI	D-mannitol	+	builds acid from
67792	16899 ChEBI	D-mannitol	+	carbon source
67792	16899 ChEBI	D-mannitol	+	energy source
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
67792	16024 ChEBI	D-mannose	+	builds acid from
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
67792	16988 ChEBI	D-ribose	-	builds acid from
67792	16988 ChEBI	D-ribose	-	energy source
67792	16988 ChEBI	D-ribose	-	carbon source
67792	17924 ChEBI	D-sorbitol	+	builds acid from
67792	17317 ChEBI	D-sorbose	-	energy source
67792	17317 ChEBI	D-sorbose	-	carbon source
67792	16443 ChEBI	D-tagatose	-	builds acid from
67792	65327 ChEBI	D-xylose	+	builds acid from
67792	65327 ChEBI	D-xylose	-	energy source
67792	65327 ChEBI	D-xylose	-	carbon source
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
67792	17113 ChEBI	erythritol	-	builds acid from
67792	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
67792		esculin ferric citrate	-	builds acid from
67792	16813 ChEBI	galactitol	-	builds acid from
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
67792	28066 ChEBI	gentiobiose	-	builds acid from
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
67792	17234 ChEBI	glucose	-	fermentation
67792	17754 ChEBI	glycerol	+	builds acid from
67792	15428 ChEBI	glycine	-	energy source
67792	15428 ChEBI	glycine	-	carbon source
67792	28087 ChEBI	glycogen	+	builds acid from
67792	15443 ChEBI	inulin	-	builds acid from
67792	16977 ChEBI	L-alanine	+	carbon source
67792	16977 ChEBI	L-alanine	+	energy source
67792	30849 ChEBI	L-arabinose	+	builds acid from
67792	30849 ChEBI	L-arabinose	-	energy source
67792	30849 ChEBI	L-arabinose	-	carbon source
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
67792	18403 ChEBI	L-arabitol	-	builds acid from
67792	16467 ChEBI	L-arginine	+	carbon source
67792	16467 ChEBI	L-arginine	+	energy source
67792	17196 ChEBI	L-asparagine	+	carbon source
67792	17196 ChEBI	L-asparagine	+	energy source
67792	29991 ChEBI	L-aspartate	+	carbon source
67792	29991 ChEBI	L-aspartate	+	energy source
67792	18287 ChEBI	L-fucose	-	builds acid from
67792	29988 ChEBI	L-glutamate	+	carbon source
67792	29988 ChEBI	L-glutamate	+	energy source
67792	18050 ChEBI	L-glutamine	+	carbon source
67792	18050 ChEBI	L-glutamine	+	energy source
67792	17203 ChEBI	L-proline	+	carbon source
67792	17203 ChEBI	L-proline	+	energy source
67792	62345 ChEBI	L-rhamnose	-	builds acid from
67792	62345 ChEBI	L-rhamnose	-	energy source
67792	62345 ChEBI	L-rhamnose	-	carbon source
67792	17115 ChEBI	L-serine	-	energy source
67792	17115 ChEBI	L-serine	-	carbon source
67792	17266 ChEBI	L-sorbose	-	builds acid from
67792	16857 ChEBI	L-threonine	+	carbon source
67792	16857 ChEBI	L-threonine	+	energy source
67792	17895 ChEBI	L-tyrosine	+	carbon source
67792	17895 ChEBI	L-tyrosine	+	energy source
67792	65328 ChEBI	L-xylose	-	builds acid from
67792	17716 ChEBI	lactose	-	builds acid from
67792	17716 ChEBI	lactose	-	energy source
67792	17716 ChEBI	lactose	-	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
67792	17306 ChEBI	maltose	-	builds acid from
67792	17306 ChEBI	maltose	-	energy source
67792	17306 ChEBI	maltose	-	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
67792	37684 ChEBI	mannose	+	carbon source
67792	37684 ChEBI	mannose	+	energy source
67792	6731 ChEBI	melezitose	-	builds acid from
67792	28053 ChEBI	melibiose	-	builds acid from
67792	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
67792	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
67792	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
67792	17268 ChEBI	myo-inositol	+	builds acid from
67792	17268 ChEBI	myo-inositol	+	carbon source
67792	17268 ChEBI	myo-inositol	+	energy source
67792	59640 ChEBI	N-acetylglucosamine	-	builds acid from
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
67792	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
67792		potassium 2-dehydro-D-gluconate	-	builds acid from
67792		potassium 5-dehydro-D-gluconate	-	builds acid from
67792	32032 ChEBI	potassium gluconate	-	builds acid from
67792	16634 ChEBI	raffinose	-	builds acid from
67792	16634 ChEBI	raffinose	-	energy source
67792	16634 ChEBI	raffinose	-	carbon source
67792	15963 ChEBI	ribitol	-	builds acid from
67792	17814 ChEBI	salicin	-	builds acid from
67792	28017 ChEBI	starch	-	hydrolysis
67792	28017 ChEBI	starch	-	builds acid from
67792	17992 ChEBI	sucrose	-	builds acid from
67792	17992 ChEBI	sucrose	-	energy source
67792	17992 ChEBI	sucrose	-	carbon source
67792	27082 ChEBI	trehalose	-	builds acid from
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
67792	32528 ChEBI	turanose	-	builds acid from
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
67792	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
67792	15688 ChEBI	acetoin
67792	16136 ChEBI	hydrogen sulfide
67792	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
67792	15688 ChEBI	acetoin		-
67792	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
67792	acid phosphatase	+	3.1.3.2
67792	alkaline phosphatase	+	3.1.3.1
67792	alpha-chymotrypsin	-	3.4.21.1
67792	alpha-fucosidase	+	3.2.1.51
67792	alpha-galactosidase	-	3.2.1.22
67792	alpha-glucosidase	-	3.2.1.20
67792	alpha-mannosidase	-	3.2.1.24
67792	arginine dihydrolase	+	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
67792	beta-glucosidase	+	3.2.1.21
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
67792	beta-glucuronidase	-	3.2.1.31
67792	catalase	+	1.11.1.6
67792	cystine arylamidase	+	3.4.11.3
67792	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
67792	esterase (C 4)	+
67792	esterase Lipase (C 8)	+
68369	gelatinase	-		from API 20NE
67792	leucine arylamidase	+	3.4.11.1
67792	lipase (C 14)	+
67792	N-acetyl-beta-glucosaminidase	+	3.2.1.52
67792	naphthol-AS-BI-phosphohydrolase	+
67792	trypsin	-	3.4.21.4
67792	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
67792	valine arylamidase	+

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
66511	-	-	-	-	-	-	-	+	+	+	+	+	+	-	+	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66511	soil	Diaoshuihu, Heilongjiang province (44° 04' N, 125° 42' E)	China	CHN	Asia	44.0733	125.42 44.0733/125.42
67792	soil sample	Diaoshuihu, Heilongjiang	China	CHN	Asia	44.0666	125.7 44.0666/125.7	tryptic soy agar	2 days	28	standard dilution plating technique

Taxonmaps

69479

Global distribution of 16S sequence MH063434 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	235
Soil Samples	1866
Animal Samples	395
Plant Samples	715
Total Samples	3211

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67792	ASM339092v1 assembly for Trinickia diaoshuihuensis NEAU-SY24	contig	GCA_003390925	2292265.3	2900627977	2292265	58.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66511	Trinickia diaoshuihuensis 16S ribosomal RNA gene, partial sequence	MH063434	1524		1926495

GC content

@ref	GC-content (mol%)	Method
66511	63.3	sequence analysis
67792	63.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Trinickia diaoshuihuensis NEAU-SY24
NCBI: GCA_003390925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.10	no
125439	motility	BacteriaNetⓘ	yes	65.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	98.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Trinickia diaoshuihuensis sp. nov., a plant growth promoting bacterium isolated from soil.	Fu Y, Yan R, Liu D, Jiang S, Cui L, Guo X, Wang X, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003155	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66511	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106065
#67792	Yansong Fu, Rui Yan, Dongli Liu, Shanwen Jiang, Lin Cui, Xiaowei Guo, Xiangjing Wang, Ji Zhang, Wensheng Xiang: Trinickia diaoshuihuensis sp. nov., a plant growth promoting bacterium isolated from soil. IJSEM 69: 291 - 296 2019 ( DOI 10.1099/ijsem.0.003155 )
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Trinickia diaoshuihuensis (DSM 106065, CCTCC AA 2018003, NEAU-SY24)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003390925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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