Name: Nocardia aurea DSM 103986
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159660

Type strain:

Species: Nocardia aurea

Culture col. no.: DSM 103986, KCTC 39849, SYSU K10002

Strain history: <- B. Fang, Sun Yet-Sen University; SYSU K10002

NCBI tax ID(s): 2144174 (species)

SI-ID 398378

DSM 103986

Section

Nocardia aurea DSM 103986 is a mesophilic bacterium that builds an aerial mycelium and was isolated from karst cave soil samples.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia aurea**
	Full Scientific Name (LPSN)	Nocardia aurea Fang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69269]	Colony color	Beige (1001), daffodil yellow (1007)
[Ref.: #69269]	Cultivation medium used	suter with tyrosine

[Ref.: #69269]	Colony color	Light ivory (1015), daffodil yellow (1007)
[Ref.: #69269]	Cultivation medium used	ISP 5

[Ref.: #69269]	Colony color	Light ivory (1015), maize yellow (1006)
[Ref.: #69269]	Cultivation medium used	suter without tyrosine

[Ref.: #69269]	Colony color	Maize yellow (1006)
[Ref.: #69269]	Cultivation medium used	ISP 2

[Ref.: #69269]	Colony color	Oyster white (1013), maize yellow (1006)
[Ref.: #69269]	Cultivation medium used	ISP 4

[Ref.: #69269]	Colony color	Oyster white (1013), signal yellow (1003)
[Ref.: #69269]	Cultivation medium used	ISP 3

[Ref.: #69269]	Colony color	Pure white (9010)
[Ref.: #69269]	Cultivation medium used	ISP 6

[Ref.: #69269]	Colony color	Red brown (8012), maize yellow (1006)
[Ref.: #69269]	Cultivation medium used	ISP 7

[Ref.: #69269]	Pigment production	no
[Ref.: #69269]	Pigment name	Melanin
[Ref.: #69269]	Pigment production	yes
[Ref.: #69269]	Pigmentation color	Copper brown (8004)
[Ref.: #69269]	Pigment name	soluble pigment

[Ref.: #69269]	Multicellular complex forming ability	no
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Medium Name (multicellularity)	ISP 2

[Ref.: #69269]	Multicellular complex forming ability	no
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Medium Name (multicellularity)	ISP 3

[Ref.: #69269]	Multicellular complex forming ability	no
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Medium Name (multicellularity)	ISP 4

[Ref.: #69269]	Multicellular complex forming ability	yes
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Multicellular complex color	Signal white (9003)
[Ref.: #69269]	Medium Name (multicellularity)	ISP 5

[Ref.: #69269]	Multicellular complex forming ability	no
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Medium Name (multicellularity)	ISP 6

[Ref.: #69269]	Multicellular complex forming ability	yes
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Multicellular complex color	Signal white (9003)
[Ref.: #69269]	Medium Name (multicellularity)	ISP 7

[Ref.: #69269]	Multicellular complex forming ability	yes
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Multicellular complex color	Signal white (9003)
[Ref.: #69269]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69269]	Multicellular complex forming ability	yes
[Ref.: #69269]	Multicellular complex name	Aerial mycelium
[Ref.: #69269]	Multicellular complex color	Signal white (9003)
[Ref.: #69269]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #66510]

Caption:

Medium 65 28°C

[Ref.: #66510]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66510]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #66510]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #66510]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66510]			growth	28 °C

[Ref.: #66510]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69269]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69269]	arabinose ChEBI	-	growth
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #69269]	cellulose ChEBI	-	growth
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE, API Coryne
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69269]	fructose ChEBI	-	growth
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE, API Coryne
[Ref.: #69269]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69269]	inositol ChEBI	-	growth
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69269]	mannose ChEBI	-	growth
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69269]	raffinose ChEBI	-	growth
[Ref.: #69269]	rhamnose ChEBI	-	growth
[Ref.: #69269]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API Coryne
[Ref.: #69269]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne, API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne, API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #66510]	25178	+	-	-	-	-	+	+	+/-	+	-	-	-	-	-	+/-	-	+/-	-	-	-	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69269]	3763	-	-	-	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #66510]	14284	-	+/-	-	+/-	-	+	-	-	-	-	+/-	+/-	-	-	-	+	+	-	-	-
[Ref.: #69269]	5947	not determinedn.d.	+	+	+	+/-	+	+/-	+/-	+	-	+	+/-	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66510]	Sample type/isolated from	karst cave soil samples
[Ref.: #66510]	Geographic location (country and/or sea, region)	Xingyi
[Ref.: #66510]	Country	China
[Ref.: #66510]	Country ISO 3 Code	CHN
[Ref.: #66510]	Continent	Asia
[Ref.: #66510]	Geographic location	25.1500°/104.7670°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66510]	Nocardia sp. strain SYSU K10002 16S ribosomal RNA gene, partial sequence	MH091575	1511	ENA	1821 tax ID

[Ref.: #66510]

GC-content

67.4 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #66510]

Culture collection no.

DSM 103986, KCTC 39849, SYSU K10002

[Ref.: #112134]

SI-ID 398378

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia noduli sp. nov., a novel actinobacterium with biotechnological potential.	Nouioui I, Potter G, Jando M, Goodfellow M	Arch Microbiol	10.1007/s00203-022-02878-x	2022	*
Phylogeny	Nocardia aurea sp. nov., a novel actinobacterium isolated from a karstic subterranean environment.	Fang BZ, Han MX, Zhang LY, Jiao JY, Zhang XT, Zhang ZT, Wang Y, Nie GX, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003122	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66510

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103986

#68369

Automatically annotated from API 20NE .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69269

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#112134

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398378.1 )

* These data were automatically processed and therefore are not curated

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