Clostridium beihaiense (DSM 110900, CICC 24109, KCTC 15555)

Name: Clostridium beihaiense (DSM 110900, CICC 24109, KCTC 15555)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159644

Type strain

Strain Designation YB-7

Culture col. no. DSM 110900 CICC 24109 KCTC 15555 YB-7

NCBI tax ID(s) 2282766

Special Collections DSMZ KCTC Literature strains

History DSMZ <- KCTC; KCTC 15555 <- CICC; CICC 24109 KCTC <- CICC

Links

Clostridium beihaiense YB-7 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from From activated sludge of an anaerobic baffled reactor pond.

spore-forming Gram-positive rod-shaped anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407080

KCTC 15555,DSM 110900

@ref 20215

Last LPSN update 2026-05-29 08:44:14

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium beihaiense

Full scientific name Clostridium beihaiense Dong et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
66625	positive	2.4-5.7 µm	0.9-1 µm	rod-shaped
67771				rod-shaped
67771	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66494	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66494	positive	growth	37
66625	positive	optimum	37
66625	positive	growth	20-45
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
66625	positive	optimum	7
66625	positive	growth	5-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
66625	anaerobe
67771	anaerobe

Spore formation

@ref	Type of spore	Spore formation
66625	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66625	NaCl	positive	growth	0-5 %(w/v)
66625	NaCl	positive	optimum	5 %(w/v)

Observation

66625

Observationcells are observed as single cells, pairs, or chains of cells arranged on the plate after culturing 72 h

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66625	22599 ChEBI	arabinose	-	assimilation
66625	15903 ChEBI	beta-d-glucose	-	assimilation
66625	17057 ChEBI	cellobiose	-	assimilation
66625	5291 ChEBI	gelatin	+	hydrolysis
66625	17234 ChEBI	glucose	-	assimilation
66625	17754 ChEBI	glycerol	-	assimilation
66625	35581 ChEBI	indole	-	assimilation
66625	17716 ChEBI	lactose	-	assimilation
66625	17306 ChEBI	maltose	-	assimilation
66625	29864 ChEBI	mannitol	-	assimilation
66625	6731 ChEBI	melezitose	-	assimilation
66625	17632 ChEBI	nitrate	-	reduction
66625	16634 ChEBI	raffinose	-	assimilation
66625	26546 ChEBI	rhamnose	-	assimilation
66625	17814 ChEBI	salicin	-	assimilation
66625	30911 ChEBI	sorbitol	-	assimilation
66625	28017 ChEBI	starch	-	hydrolysis
66625	17992 ChEBI	sucrose	-	assimilation
66625	27082 ChEBI	trehalose	-	assimilation
66625	27252 ChEBI	uronic acid	-	assimilation
66625	18222 ChEBI	xylose	-	assimilation

Enzymes

@ref	Value	Activity	Ec
66625	acid phosphatase	+	3.1.3.2
66625	alkaline phosphatase	+	3.1.3.1
66625	alpha-galactosidase	-	3.2.1.22
66625	alpha-glucosidase	+	3.2.1.20
66625	beta-D-fucosidase	-	3.2.1.38
66625	beta-galactosidase	-	3.2.1.23
66625	beta-glucosidase	-	3.2.1.21
66625	catalase	-	1.11.1.6
66625	chymotrypsin	-	3.4.4.5
66625	cystine arylamidase	-	3.4.11.3
66625	cytochrome oxidase	-	1.9.3.1
66625	esterase (C 4)	+
66625	esterase Lipase (C 8)	-
66625	leucine arylamidase	-	3.4.11.1
66625	lipase (C 14)	-
66625	N-acetyl-beta-glucosaminidase	-	3.2.1.52
66625	naphthol-AS-BI-phosphohydrolase	+
66625	trypsin	+	3.4.21.4
66625	urease	+	3.5.1.5
66625	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
67771	From activated sludge of an anaerobic baffled reactor(ABR) pond	Beihai, Guangxi	China	CHN	Asia	21.0428	109.088 21.0428/109.088
66494	active sludge of an anaerobic baffled reactor in wastewater treatment plant	Guangxi, Beihai	China	CHN	Asia
66625	activated sludge of WTWTP	Beihai, Guangxi	China	CHN	Asia	21.0427	109.088 21.0427/109.088	Reinforced Clostridial Agar	10.0 g l-1 peptone, 10.0 g l-1 beef extract, 3.0 g l-1 yeast extract, 5.0 g l-1 glucose, 1.0 g l-1 soluble starch, 5.0 g l-1 NaCl, 5.0 g l-1 sodium acetate, 0.5 g l-1 L-cysteine and 1.5 % agar	7 days	37	The sample was diluted to 10-2 times and plated on Reinforced Clostridial Agar at 37°C for 7 days

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66625	Clostridium beihaiense strain ABR-7 16S ribosomal RNA gene, partial sequence	MF125275	1382		2282766

GC content

@ref	GC-content (mol%)	Method
66494	32.3	high performance liquid chromatography (HPLC)
67771	32.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Alkaliphilus flagellatus sp. nov., Butyricicoccus intestinisimiae sp. nov., Clostridium mobile sp. nov., Clostridium simiarum sp. nov., Dysosmobacter acutus sp. nov., Paenibacillus brevis sp. nov., Peptoniphilus ovalis sp. nov. and Tissierella simiarum sp. nov., isolated from monkey faeces.	Li DH, Abuduaini R, Du MX, Wang YJ, Chen HH, Zhou N, Zhu HZ, Lu Y, Yu PJ, Yang YP, Jiang CY, Sun Q, Liu C, Liu SJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005276	2022
Phylogeny	Clostridium beihaiense sp. nov., an anaerobic bacterium isolated from activated sludge.	Dong Y, Liu Y, Chen N, Zhong Y, Liu L, Xie Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.002885	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66494	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110900
#66625	Yingying Dong, Yuhui Liu, Nanchun Chen, Yijian Zhong, Li Liu, Qinglin Xie: Clostridium beihaiense sp. nov., an anaerobic bacterium isolated from activated sludge. IJSEM 68: 2789 - 2793 2018 ( DOI 10.1099/ijsem.0.002885 , PubMed 30028283 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Clostridium beihaiense (DSM 110900, CICC 24109, KCTC 15555)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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