Name: Streptomyces triticirhizae NEAU-YY642
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159640

Type strain:

Species: Streptomyces triticirhizae

Strain Designation: NEAU-YY642

Culture col. no.: DSM 107172, CCTCC AA 2018092

Strain history: <- J. Zhao, School of Life Science, Northeast Agricultural University; NEAU-YY642

NCBI tax ID(s): 2483353 (species)

SI-ID 400161

DSM 107172

Special Collections

Section

When using BacDive for research please cite our paper

Streptomyces triticirhizae NEAU-YY642 is an aerobe, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
spore-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces triticirhizae**
	Full Scientific Name (LPSN)	Streptomyces triticirhizae Han et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69500]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %99.8
[Ref.: #125438]	Gram stain	positive Confidence in %91.497

[Ref.: #69500]	Cell length	0.7-1.6 µm

[Ref.: #69500]	Cell width	0.2-0.5 µm

[Ref.: #69500]	Cell shape	spore-shaped

[Ref.: #69500]	Motility	no
[Ref.: #125439]	Motility	no Confidence in %91.2

[Ref.: #69334]	Colony color	Ivory (1014)
[Ref.: #69334]	Cultivation medium used	ISP 6

[Ref.: #69334]	Colony color	Light ivory (1015)
[Ref.: #69334]	Cultivation medium used	ISP 4

[Ref.: #69334]	Colony color	Light ivory (1015)
[Ref.: #69334]	Cultivation medium used	ISP 5

[Ref.: #69334]	Colony color	Light ivory (1015), brown beige (1011)
[Ref.: #69334]	Cultivation medium used	ISP 7

[Ref.: #69334]	Colony color	Light ivory (1015), sand yellow (1002)
[Ref.: #69334]	Cultivation medium used	suter without tyrosine

[Ref.: #69334]	Colony color	Ochre brown (8001)
[Ref.: #69334]	Cultivation medium used	suter with tyrosine

[Ref.: #69334]	Colony color	Oyster white (1013), maize yellow (1006)
[Ref.: #69334]	Cultivation medium used	ISP 3

[Ref.: #69334]	Colony color	Sand yellow (1002)
[Ref.: #69334]	Cultivation medium used	ISP 2

[Ref.: #69334]	Pigment production	no
[Ref.: #69334]	Pigment name	Melanin
[Ref.: #69334]	Pigment production	yes
[Ref.: #69334]	Pigmentation color	Ochre brown (8001)
[Ref.: #69334]	Pigment name	soluble pigment

[Ref.: #69334]	Multicellular complex forming ability	yes
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	ISP 2

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	ISP 3

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	ISP 4

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	ISP 5

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	ISP 6

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	ISP 7

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69334]	Multicellular complex forming ability	no
[Ref.: #69334]	Multicellular complex name	Aerial mycelium
[Ref.: #69334]	Medium Name (multicellularity)	suter without tyrosine

[Ref.: #69500]	Multicellular complex forming ability	yes
[Ref.: #69500]	Multicellular complex name	aerial mycelium
[Ref.: #69500]	Medium Name (multicellularity)	ISP 6
[Ref.: #69500]	Multicellular complex further description	differentiated into straight or flexuous spore chains consisting of cylindrical spores

Multimedia content

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Caption:

Medium 252 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #66484]

Culture medium composition

expand / minimize

[Ref.: #69500]

Culture medium

ISP 3

[Ref.: #69500]

Culture medium growth

[Ref.: #69500]

Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

Bennetts Agar

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Culture medium growth

		Temperature
[Ref.: #66484]	growth	28 °C
[Ref.: #69500]	growth	15.0-45.0 °C
[Ref.: #69500]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #69500]			optimum	7
[Ref.: #69500]			growth	4.0-6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69500]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.5

[Ref.: #125439]

Ability of spore formation

yes Confidence in %96.9

	Salt		Salt conc.
[Ref.: #69334]	NaCl	growth	0-2.5	%
[Ref.: #69500]	NaCl	growth	0.0-6.0	%(w/v)
[Ref.: #69500]	NaCl	optimum	0.0-1.0	%(w/v)

[Ref.: #69500]	Observation	The cell wall contains ll-diaminopimelic acid as diagnostic diamino acid and the whole-cell hydrolysate contains glucose and ribose.
[Ref.: #69500]	Observation	The polar lipid profile contains diphosphatidylglycerol, phosphatidylethanolamine and two phosphatidylinositol mannosides

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69334]	arabinose ChEBI	+	growth
[Ref.: #69334]	cellulose ChEBI	-	growth
[Ref.: #69500]	creatine ChEBI	-	nitrogen source
[Ref.: #69500]	D-fructose ChEBI	-	carbon source
[Ref.: #69500]	D-galactose ChEBI	-	carbon source
[Ref.: #69500]	D-glucose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69500]	D-mannitol ChEBI	-	carbon source
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #69500]	D-mannose ChEBI	+	carbon source
[Ref.: #69500]	D-ribose ChEBI	+	carbon source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69500]	D-sorbitol ChEBI	-	carbon source
[Ref.: #69500]	D-xylose ChEBI	+	carbon source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69500]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69334]	fructose ChEBI	+	growth
[Ref.: #69500]	galactitol ChEBI	-	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69334]	glucose ChEBI	-	growth
[Ref.: #69500]	glycine ChEBI	-	nitrogen source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69334]	inositol ChEBI	-	growth
[Ref.: #69500]	L-alanine ChEBI	+	nitrogen source
[Ref.: #69500]	L-arabinose ChEBI	-	carbon source
[Ref.: #69500]	L-arginine ChEBI	+	nitrogen source
[Ref.: #69500]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #69500]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #69500]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #69500]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #69500]	L-proline ChEBI	+	nitrogen source
[Ref.: #69500]	L-rhamnose ChEBI	-	carbon source
[Ref.: #69500]	L-serine ChEBI	+	nitrogen source
[Ref.: #69500]	L-threonine ChEBI	+	nitrogen source
[Ref.: #69500]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #69500]	lactose ChEBI	-	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69500]	maltose ChEBI	-	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69334]	mannose ChEBI	+	growth
[Ref.: #69500]	myo-inositol ChEBI	-	carbon source
[Ref.: #69500]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69334]	raffinose ChEBI	+	growth
[Ref.: #69500]	raffinose ChEBI	+	carbon source
[Ref.: #69334]	rhamnose ChEBI	+	growth
[Ref.: #69500]	starch ChEBI	+	hydrolysis
[Ref.: #69334]	sucrose ChEBI	+	growth
[Ref.: #69500]	sucrose ChEBI	-	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69500]	tween 20 ChEBI	-	hydrolysis
[Ref.: #69500]	tween 40 ChEBI	-	hydrolysis
[Ref.: #69500]	tween 80 ChEBI	-	hydrolysis
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69334]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69500]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #69500]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #69500]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69334]	3827	-	-	-	+	-	+	+	+	+	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69334]	6011	not determinedn.d.	+	+	+	+	+	+	+	+	+/-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66484]	Sample type/isolated from	soil
[Ref.: #66484]	Geographic location (country and/or sea, region)	Central China, Henan province, Zhumadian (33° 5' 50.9'' N, 113° 57' 3'' E)
[Ref.: #66484]	Country	China
[Ref.: #66484]	Country ISO 3 Code	CHN
[Ref.: #66484]	Continent	Asia
[Ref.: #66484]	Geographic location	33.0975°/113.9510°

[Ref.: #69500]	Sample type/isolated from	soil sample from rhizosphere soil of Triticum aestivum
[Ref.: #69500]	Geographic location (country and/or sea, region)	Zhumadian, Henan Province
[Ref.: #69500]	Country	China
[Ref.: #69500]	Country ISO 3 Code	CHN
[Ref.: #69500]	Continent	Asia
[Ref.: #69500]	Enrichment culture	DPA
[Ref.: #69500]	Enrichment culture composition	DPA supplemented with cycloheximide (50 mg/l) and nalidixic acid (20 mg/l).
[Ref.: #69500]	Enrichment culture duration	28 days
[Ref.: #69500]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66484]	Streptomyces triticirhizae strain NEAU-YY642 16S ribosomal RNA gene, partial sequence	MH144589	1537	GenBank ENA	2483353 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69500]	genome sequence	RFFJ00000000		GenBank ENA	2483353 tax ID
[Ref.: #66792]	Streptomyces triticirhizae NEAU-YY642	GCA_003696235	scaffold	GenBank ENA	2483353 tax ID	*
[Ref.: #66792]	Streptomyces triticirhizae NEAU-YY642	2862705112	draft	JGI IMG/M	2483353 tax ID	*

[Ref.: #66484]	GC-content	73.3 mol%	sequence analysis
[Ref.: #69500]	GC-content	73.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces triticirhizae NEAU-YY642 NCBI: GCA_003696235.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	91.497	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.91	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	89.443	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	89.432	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	92.947	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces triticirhizae NEAU-YY642 NCBI: GCA_003696235
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	96.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	91.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.5

Availability in culture collections External links

[Ref.: #66484]

Culture collection no.

DSM 107172, CCTCC AA 2018092

[Ref.: #112114]

SI-ID 400161

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces triticagri sp. nov. and Streptomyces triticirhizae sp. nov., two novel Actinobacteria isolated from the rhizosphere soil of wheat (Triticum aestivum L.).	Han C, Yu Z, Zhao J, Shi H, Hu J, Yu B, Song J, Shen Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003727	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66484

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107172

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69334

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69500

Kallayanee Naloka, Pattaraporn Yukphan, Minenosuke Matsutani, Kazunobu Matsushita, Gunjana Theeragool: Streptomyces triticagri sp. nov. and Streptomyces triticirhizae sp. nov., two novel Actinobacteria isolated from the rhizosphere soil of wheat (Triticum aestivum L.). IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003727 )

#112114

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400161.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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