Name: Rubrivivax pictus W35
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159621

Type strain:

Species: Rubrivivax pictus

Strain Designation: W35

Culture col. no.: DSM 106757, NBRC 111963

Strain history: <- S. Hanada, Tokyo Metropolitan University, Hachioji, Japan; W35 <- S. Hirose

NCBI tax ID(s): 2315236 (species)

SI-ID 400742

DSM 106757

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Rubrivivax pictus W35 is a bacterium that was isolated from Biofilm on submerged stone in a river.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Sphaerotilaceae*
	Genus	*Rubrivivax*
	Species	**Rubrivivax pictus**
	Full Scientific Name (LPSN)	Rubrivivax pictus (Hirose et al. 2020) Liu et al. 2023

	Synonym	Aquabacterium pictum
	Synonym	Pseudaquabacterium pictum

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %94.6

Multimedia content

[Ref.: #66456]

Caption:

DSM 106757 on medium 830 at 28 °C

[Ref.: #66456]

Intellectual property rights:

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %99.8

[Ref.: #125439]

Ability of spore formation

no Confidence in %95

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66456]	Sample type/isolated from	Biofilm on submerged stone in a river
[Ref.: #66456]	Geographic location (country and/or sea, region)	Ome, Tokyo
[Ref.: #66456]	Country	Japan
[Ref.: #66456]	Country ISO 3 Code	JPN
[Ref.: #66456]	Continent	Asia
[Ref.: #66456]	Geographic location	35.7869°/139.2540°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Geologic
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC094486 (>99% sequence identity) for Aquabacterium pictum subclade from Microbeatlas

Aquatic Samples	36
Soil Samples	4
Animal Samples
Plant Samples	2
Total Samples	42

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66456]	Aquabacterium pictum W35 gene for 16S ribosomal RNA	LC094486	1451	GenBank ENA	2315236 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aquabacterium pictum W35	GCA_005403045	contig	GenBank ENA	2315236 tax ID	*
[Ref.: #66792]	Aquabacterium pictum W35	2887210033	draft	JGI IMG/M	2315236 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aquabacterium pictum W35 NCBI: GCA_005403045
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	85.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	94.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.8

Availability in culture collections External links

[Ref.: #66456]

Culture collection no.

DSM 106757, NBRC 111963

[Ref.: #112095]

SI-ID 400742

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquabacterium pictum sp. nov., the first aerobic bacteriochlorophyll a-containing fresh water bacterium in the genus Aquabacterium of the class Betaproteobacteria.	Hirose S, Tank M, Hara E, Tamaki H, Mori K, Takaichi S, Haruta S, Hanada S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003798	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66456

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106757

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#112095

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400742.1 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Aquabacterium pictum W35

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