Rubrivivax pictus W35 is a bacterium that was isolated from Biofilm on submerged stone in a river.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Sphaerotilaceae |
| Genus Rubrivivax |
| Species Rubrivivax pictus |
| Full scientific name Rubrivivax pictus (Hirose et al. 2020) Liu et al. 2023 |
| Synonyms (2) |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125439 | negative | 94.6 |
| @ref: | 66456 |
| multimedia content: | DSM_106757.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_106757.jpg |
| caption: | DSM 106757 on medium 830 at 28 °C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 66456 | R2A MEDIUM (DSMZ Medium 830) | Medium recipe at MediaDive | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water | ||
| 66456 | PE MEDIUM (DSMZ Medium 1498) | Medium recipe at MediaDive | Name: PE MEDIUM (DSMZ Medium 1498) Composition: Agar 15.0 g/l K2HPO4 1.14115 g/l KH2PO4 0.68045 g/l Na glutamate 0.5 g/l Sodium acetate 0.5 g/l Sodium Thiosulfate 0.5 g/l Yeast extract 0.5 g/l Casamino acids 0.5 g/l (NH4)2SO4 0.5 g/l Sodium succinate 0.5 g/l MgSO4 x 7 H2O 0.12325 g/l NaCl 0.117 g/l CaCl2 x 2 H2O 0.0147 g/l FeSO4 x 7 H2O 0.00555 g/l Na3-EDTA 0.002 g/l Nicotinic acid 0.001 g/l Thiamine-HCl x 2 H2O 0.001 g/l MnSO4 x 4 H2O 0.000558 g/l p-Aminobenzoic acid 0.0005 g/l Calcium pantothenate 0.0005 g/l Pyridoxine hydrochloride 0.0005 g/l Folic acid 0.0005 g/l H3BO3 0.000155 g/l Co(NO3)2 x 6 H2O 0.000146 g/l ZnSO4 x 7 H2O 0.000144 g/l CuSO4 x 6 H2O 0.000126 g/l Na2MoO4 x 2 H2O 0.000121 g/l Biotin 5e-05 g/l Vitamin B12 1e-05 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 66456 | positive | growth | 28 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Aquatic | #Geologic | |
| #Environmental | #Aquatic | #River (Creek) | |
| #Environmental | #Biofilm | - |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 66456 | Biofilm on submerged stone in a river | Ome, Tokyo | Japan | JPN | Asia | 35.7869 | 139.254 35.7869/139.254 |
Global distribution of 16S sequence LC094486 (>99% sequence identity) for Aquabacterium pictum subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM540304v1 assembly for Pseudaquabacterium pictum W35 | contig | 2315236 | 66.71 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 66456 | Aquabacterium pictum W35 gene for 16S ribosomal RNA | LC094486 | 1451 | 2315236 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Aquabacterium pictum sp. nov., the first aerobic bacteriochlorophyll a-containing fresh water bacterium in the genus Aquabacterium of the class Betaproteobacteria. | Hirose S, Tank M, Hara E, Tamaki H, Mori K, Takaichi S, Haruta S, Hanada S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003798 | 2020 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66456 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106757 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive159621.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data