Name: Agromyces badenianii MF30-A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159615

Type strain:

Species: Agromyces badenianii

Strain Designation: MF30-A

Culture col. no.: DSM 106183, CGMCC 1.16469

Strain history: <- F. Mi, Chinese Center for Disease Control and Prevention, State Key Laboratory of Infections Disease Prevention and Control; MF30-A

NCBI tax ID(s): 2080742 (species)

SI-ID 400345

DSM 106183

Section

Agromyces badenianii MF30-A is a mesophilic bacterium that was isolated from Plateau Pika.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces badenianii**
	Full Scientific Name (LPSN)	Agromyces badenianii Li et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.606

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66441]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #66441]

Culture medium growth

[Ref.: #66441]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66441]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66441]			growth	28 °C

[Ref.: #66441]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %91

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66441]	Sample type/isolated from	Plateau Pika
[Ref.: #66441]	Host species	Plateau pika
[Ref.: #66441]	Geographic location (country and/or sea, region)	Yushu City in QingHai Province
[Ref.: #66441]	Country	China
[Ref.: #66441]	Country ISO 3 Code	CHN
[Ref.: #66441]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Mammals

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66441]	Agromyces sp. strain MF 30-A 16S ribosomal RNA gene, partial sequence	MG461699	1493	ENA	51513 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agromyces badenianii MF30-A	GCA_003070885	complete	GenBank	2080742 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agromyces badenianii MF30-A NCBI: GCA_003070885.1
[Ref.: #69481]	spore-forming	no	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agromyces badenianii MF30-A NCBI: GCA_003070885.1
[Ref.: #69480]	flagellated	no	97.199	no
[Ref.: #69480]	gram-positive	yes	91.984	no
[Ref.: #69480]	anaerobic	no	99.533	no
[Ref.: #69480]	halophile	no	93.433	no
[Ref.: #69480]	spore-forming	no	91.687	no
[Ref.: #69480]	glucose-util	yes	84.712	no
[Ref.: #69480]	aerobic	yes	93.536	no
[Ref.: #69480]	thermophile	no	99.279	yes
[Ref.: #69480]	motile	no	88.634	no
[Ref.: #69480]	glucose-ferment	no	88.855	no

Availability in culture collections External links

[Ref.: #66441]

Culture collection no.

DSM 106183, CGMCC 1.16469

[Ref.: #112089]

SI-ID 400345

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces badenianii sp. nov., isolated from plateau pika (Ochotona curzoniae).	Li J, Lu S, Jin D, Yang J, Lai XH, Mi F, Zhang D, Zhang G, Tian Z, Dong K, Zhang S, Lei W, Pu J, Wu X, Huang Y, Ren Z, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003987	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66441

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106183

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112089

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400345.1 )

* These data were automatically processed and therefore are not curated

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