Name: Nocardioides glacieisoli HLT3-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159611

Type strain:

Species: Nocardioides glacieisoli

Strain Designation: HLT3-15

Culture col. no.: DSM 108653, CGMCC 1.11097, NBRC 109781

Strain history: <- NBRC; NBRC 109781 <- CGMCC; CGMCC 1.11097

NCBI tax ID(s): 1168730 (species)

SI-ID 397523

DSM 108653

Section

Nocardioides glacieisoli HLT3-15 is a mesophilic bacterium that was isolated from soil of ice tongue surface.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides glacieisoli**
	Full Scientific Name (LPSN)	Nocardioides glacieisoli Liu et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66437]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #66437]

Culture medium growth

[Ref.: #66437]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66437]

Culture medium composition

expand / minimize

[Ref.: #66437]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #66437]

Culture medium growth

[Ref.: #66437]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66437]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66437]			growth	28 °C

[Ref.: #66437]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66437]	Sample type/isolated from	soil of ice tongue surface
[Ref.: #66437]	Geographic location (country and/or sea, region)	Hailuogou Glacier, Szechwan Province (29.556° N, 101.969° E)
[Ref.: #66437]	Country	China
[Ref.: #66437]	Country ISO 3 Code	CHN
[Ref.: #66437]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Environmental	#Terrestrial	#Soil
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66437]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66437]	Nocardioides glacieisoli strain HLT3-15 16S ribosomal RNA gene, partial sequence	JQ673418	1462	ENA	1168730 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardioides glacieisoli HLT3-15	GCA_004137245	contig	GenBank	1168730 tax ID	*
[Ref.: #66792]	Nocardioides glacieisoli strain HLT3-15	1168730.3	wgs	PATRIC	1168730 tax ID	*
[Ref.: #66792]	Nocardioides glacieisoli HLT3-15	2867489802	draft	JGI IMG/M	1168730 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides glacieisoli strain HLT3-15 PATRIC: 1168730.3
[Ref.: #69480]	motile	no	96.006	no
[Ref.: #69480]	gram-positive	yes	91.58	no
[Ref.: #69480]	anaerobic	no	99.124	no
[Ref.: #69480]	aerobic	yes	94.602	no
[Ref.: #69480]	halophile	no	94.152	no
[Ref.: #69480]	spore-forming	no	80.958	no
[Ref.: #69480]	flagellated	no	98.079	no
[Ref.: #69480]	glucose-util	yes	86.58	no
[Ref.: #69480]	thermophile	no	98.64	yes
[Ref.: #69480]	glucose-ferment	no	89.589	no

Availability in culture collections External links

[Ref.: #66437]

Culture collection no.

DSM 108653, CGMCC 1.11097, NBRC 109781

[Ref.: #112087]

SI-ID 397523

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides baculatus sp. nov., a novel actinomycete isolated from the rhizosphere of Tagetes patula.	Chhetri G, Kim I, Kang M, Kim J, So Y, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005012	2021	*
Phylogeny	Nocardioides zhouii sp. nov., isolated from the Hailuogou Glacier in China.	Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003471	2019	*
Phylogeny	Nocardioides glacieisoli sp. nov., isolated from a glacier.	Liu Q, Liu HC, Zhang JL, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000658	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66437

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108653

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112087

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397523.1 )

* These data were automatically processed and therefore are not curated

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Nocardioides glacieisoli strain HLT3-15

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