Nocardioides glacieisoli (DSM 108653, CGMCC 1.11097, NBRC 109781)

Name: Nocardioides glacieisoli (DSM 108653, CGMCC 1.11097, NBRC 109781)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159611

Type strain

Strain Designation HLT3-15

Culture col. no. DSM 108653 CGMCC 1.11097 NBRC 109781 HLT3-15

NCBI tax ID(s) 1168730

Special Collections DSMZ

History <- NBRC; NBRC 109781 <- CGMCC; CGMCC 1.11097

Links

Nocardioides glacieisoli HLT3-15 is a mesophilic prokaryote that was isolated from soil of ice tongue surface.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397523

NBRC 109781,DSM 108653

@ref 20215

Last LPSN update 2026-02-09 11:38:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides glacieisoli

Full scientific name Nocardioides glacieisoli Liu et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.683
125439	positive	99.2

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66437	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
66437	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
66437	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66437	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Ice
#Environmental	#Terrestrial	#Soil
#Condition	#Psychrophilic (<10°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66437	soil of ice tongue surface	Hailuogou Glacier, Szechwan Province (29.556° N, 101.969° E)	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66437	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM413724v1 assembly for Nocardioides glacieisoli HLT3-15	contig	GCA_004137245	1168730.3	2867489802	1168730	70.96

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66437	Nocardioides glacieisoli strain HLT3-15 16S ribosomal RNA gene, partial sequence	JQ673418	1462		1168730

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardioides glacieisoli HLT3-15
NCBI: GCA_004137245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.80	no
125439	motility	BacteriaNetⓘ	no	61.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides glacieisoli strain HLT3-15
PATRIC: 1168730.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.68	no
125438	anaerobic	anaerobicⓘ	no	95.46	no
125438	spore-forming	spore-formingⓘ	no	63.52	no
125438	aerobic	aerobicⓘ	yes	89.02	no
125438	thermophilic	thermophileⓘ	no	95.99	yes
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Nocardioides potassii sp. nov., isolated from weathered potash tailings soil.	Liu L, Zhang Y, Chen Q, Shen Q, Li L, Cao C, Li R, Jiang J, Liu J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005967	2023
Phylogeny	Nocardioides baculatus sp. nov., a novel actinomycete isolated from the rhizosphere of Tagetes patula.	Chhetri G, Kim I, Kang M, Kim J, So Y, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005012	2021
Phylogeny	Nocardioides zhouii sp. nov., isolated from the Hailuogou Glacier in China.	Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003471	2019
Phylogeny	Nocardioides glacieisoli sp. nov., isolated from a glacier.	Liu Q, Liu HC, Zhang JL, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000658	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66437	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108653
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides glacieisoli (DSM 108653, CGMCC 1.11097, NBRC 109781)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004137245

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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