Name: Alistipes dispar 5CPEGH6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159607

Type strain:

Species: Alistipes dispar

Strain Designation: 5CPEGH6

Culture col. no.: DSM 108978, JCM 32848

Strain history: M. Sakamoto; RIKEN BRC-JCM, Japan; 5CPEGH6.

NCBI tax ID(s): 2585119 (species)

Section

Alistipes dispar 5CPEGH6 is a mesophilic bacterium that was isolated from Feces of woman.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes dispar**
	Full Scientific Name (PNU)	Alistipes dispar Sakamoto et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.917

[Ref.: #69480]	Motility	no Confidence in %94.827

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66433]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #66433]

Culture medium growth

[Ref.: #66433]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #66433]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66433]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #66433]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %98.862

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66433]	Sample type/isolated from	Feces of woman
[Ref.: #66433]	Geographic location (country and/or sea, region)	Tsukuba
[Ref.: #66433]	Country	Japan
[Ref.: #66433]	Country ISO 3 Code	JPN
[Ref.: #66433]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Feces of a woman in the forties
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Female

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66433]	Alistipes dispar 5CPEGH6 gene for 16S ribosomal RNA, partial sequence	LC468801	1464	ENA	2585119 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes dispar 5CPEGH6 DNA, complete genome	AP019736		ENA	2585119 tax ID
[Ref.: #66792]	Alistipes dispar 5CPEGH6	GCA_006542685	complete	GenBank	2585119 tax ID	*
[Ref.: #66792]	Alistipes sp. 5CPEGH6	2585119.3	complete	PATRIC	2585119 tax ID	*
[Ref.: #66792]	Alistipes dispar 5CPEGH6	2884616749	complete	JGI IMG/M	2585119 tax ID	*

[Ref.: #67770]

GC-content

61.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes dispar 5CPEGH6 NCBI: GCA_006542685.1
[Ref.: #69480]	anaerobic	yes	98.862	yes
[Ref.: #69480]	gram-positive	no	99.917	yes
[Ref.: #69480]	spore-forming	no	99.999	yes
[Ref.: #69480]	thermophile	no	99.914	no
[Ref.: #69480]	motile	no	94.827	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alistipes dispar 5CPEGH6 NCBI: GCA_006542685.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #66433]

Culture collection no.

DSM 108978, JCM 32848

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.	Sakamoto M, Ikeyama N, Ogata Y, Suda W, Iino T, Hattori M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003778	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66433

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108978

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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