Alistipes dispar (DSM 108978, JCM 32848, 5CPEGH6)

Name: Alistipes dispar (DSM 108978, JCM 32848, 5CPEGH6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159607

Type strain

Strain Designation 5CPEGH6

Culture col. no. DSM 108978 JCM 32848 5CPEGH6

NCBI tax ID(s) 2585119

Special Collections DSMZ JCM Literature strains

History <- M. Sakamoto, JCM, RIKEN Bioresource Research Center, Tsukuba ; JCM 32848 M. Sakamoto; RIKEN BRC-JCM, Japan; 5CPEGH6.

Links

Alistipes dispar 5CPEGH6 is a bacterium that was isolated from Feces of woman.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406155

JCM:32848,DSM 108978

@ref 20215

Last LPSN update 2026-02-09 11:38:41

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Rikenellaceae

Genus Alistipes

Species Alistipes dispar

Full scientific name Alistipes dispar Sakamoto et al. 2020

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.095
125438	96.149	negative
125439	99.8	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66433	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66433	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.1

Spore formation

@ref	Spore formation	Confidence
125438		93.398
125439		99.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Female

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66433	Feces of woman	Tsukuba	Japan	JPN	Asia
67770	Feces of a woman in the forties		Japan	JPN	Asia
69544	the faecal samples of healthy Japanese humans	Tsukuba	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Adis_1.0 assembly for Alistipes dispar 5CPEGH6	complete	GCA_006542685	2585119.3	2884616749	2585119	96.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66433	Alistipes dispar 5CPEGH6 gene for 16S ribosomal RNA, partial sequence	LC468801	1464		2585119

GC content

@ref	GC-content (mol%)	Method
67770	61.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alistipes dispar 5CPEGH6
NCBI: GCA_006542685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	64.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alistipes dispar 5CPEGH6
NCBI: GCA_006542685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.15	no
125438	anaerobic	anaerobicⓘ	yes	85.56	no
125438	aerobic	aerobicⓘ	no	91.38	no
125438	spore-forming	spore-formingⓘ	no	93.40	no
125438	thermophilic	thermophileⓘ	no	94.07	no
125438	flagellated	motile2+ⓘ	no	92.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.	Sakamoto M, Ikeyama N, Ogata Y, Suda W, Iino T, Hattori M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003778	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66433	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108978
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69544	Mitsuo Sakamoto, Nao Ikeyama, Yusuke Ogata, Wataru Suda, Takao Iino, Masahira Hattori, Moriya Ohkuma.: Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003778 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alistipes dispar (DSM 108978, JCM 32848, 5CPEGH6)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_006542685

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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