Name: Pseudaestuariivita atlantica 22II-S11-z3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159604

Type strain:

Species: Pseudaestuariivita atlantica

Strain Designation: 22II-S11-z3

Culture col. no.: DSM 110603, KCTC 42276, MCCC 1A09432

Strain history: <- J.-S. Lee, KCTC; KCTC 42276 <- G. Li and Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; 22II-S11-z3

NCBI tax ID(s): 1317121 (species)

SI-ID 400734

DSM 110603

Section

Pseudaestuariivita atlantica 22II-S11-z3 is a mesophilic bacterium that was isolated from Deep sea sediment of the Atlantic Ocean.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudaestuariivita*
	Species	**Pseudaestuariivita atlantica**
	Full Scientific Name (LPSN)	Pseudaestuariivita atlantica (Li et al. 2015) Wirth and Whitman 2018

Synonym

Aestuariivita atlantica

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66430]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #66430]

Culture medium growth

[Ref.: #66430]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66430]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66430]			growth	28 °C

[Ref.: #66430]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66430]	Sample type/isolated from	Deep sea sediment of the Atlantic Ocean
[Ref.: #66430]	Geographic location (country and/or sea, region)	Atlantic Ocean
[Ref.: #66430]	Country	International waters
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP742981 (>99% sequence identity) for Pseudaestuariivita atlantica subclade from Microbeatlas

Aquatic Samples	397
Soil Samples	16
Animal Samples	3
Plant Samples	15
Total Samples	431

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66430]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66430]	Aestuariivita atlantica strain 22II-S11-z3 16S ribosomal RNA gene, partial sequence	KP742981	1426	ENA	1317121 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudaestuariivita atlantica 22II-S11-z3	GCA_001205715	contig	GenBank	1317121 tax ID	*
[Ref.: #66792]	Pseudaestuariivita atlantica 22II-S11-z3	2645727674	draft	JGI IMG/M	1317121 tax ID	*

Availability in culture collections External links

[Ref.: #66430]

Culture collection no.

DSM 110603, KCTC 42276, MCCC 1A09432

[Ref.: #112080]

SI-ID 400734

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariivita atlantica sp. nov., isolated from deep-sea sediment.	Li G, Lai Q, Du Y, Liu X, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000406	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66430

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110603

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#112080

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400734.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudaestuariivita atlantica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF