Actinomadura logoneensis (DSM 105122, CGMCC 4.7411, NEAU-G17)

Name: Actinomadura logoneensis (DSM 105122, CGMCC 4.7411, NEAU-G17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159574

Type strain

Strain Designation NEAU-G17

Culture col. no. DSM 105122 CGMCC 4.7411 NEAU-G17

NCBI tax ID(s) 2293572

Special Collections DSMZ Wink compendium Literature strains

History <- J. Zhao; Northeast Agricultural University, Harbin, P.R. CHINA; NEAU-G17<-J. Zhao; School of Life Science, Northeast Agricultural University

Links

Actinomadura logoneensis NEAU-G17 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from soil.

spore-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402472

DSM 105122

@ref 20215

Last LPSN update 2026-02-09 11:38:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura logoneensis

Full scientific name Actinomadura logoneensis Shi et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.9

Colony morphology

@ref	Colony color	Medium used
69284	Beige (1001), Light ivory (1015)	ISP 2
69284	Beige (1001), Light ivory (1015)	suter with tyrosine
69284	Beige (1001)	ISP 7
68183	yellow
69284	Light ivory (1015)	ISP 3
69284	Light ivory (1015)	suter without tyrosine
69284	Ochre yellow (1024)	ISP 6
69284	Oyster white (1013)	ISP 4
69284	Oyster white (1013)	ISP 5

Multicellular morphology

@ref	Complex color	Medium name	Further description	Complex name
68183	depending on medium aerial mycelium: greenish yellow (ISP1, ISP2, ISP7, Czapek's agar), yellow (ISP3, ISP4, ISP6, Bennett's agar) and orange yellow (ISP5)	ISP1, ISP2, ISP3, ISP4, ISP5, ISP6, ISP7, Bennett's agar, Czapek's agar	well-developed, branched substrate hyphae and aerial mycelium that differentiates into flexuous spore chains consisted of cylindrical spores
69284		ISP 2		Aerial mycelium
69284		ISP 3		Aerial mycelium
69284		ISP 4		Aerial mycelium
69284		ISP 5		Aerial mycelium
69284		ISP 6		Aerial mycelium
69284		ISP 7		Aerial mycelium
69284		suter with tyrosine		Aerial mycelium
69284		suter without tyrosine		Aerial mycelium

Pigmentation

@ref	Production	Color	Name
69284			melanin pigment
69284		Sand yellow (1002), ivory (1014)	soluble pigment

Multimedia

@ref:	66400
multimedia content:	DSM_105122.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105122.jpg
caption:	Medium 215 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66400	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
66400	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
66400	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66400	positive	growth	28	mesophilic
68183	positive	growth	25-42
68183	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
68183	positive	optimum	7
68183	positive	growth	5.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68183	aerobe
125439	obligate aerobe	99.4

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
68183	flexuous spore chains consisted of cylindrical spores (0.5-0.7 µm x 0.8-1.0 µm)	spore
125439				95.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68183	NaCl	positive	growth	0-4.0 %(w/v)
69284	NaCl	positive	growth	0-5 %

Observation

68183

Observationforms well-developed, branched substrate hyphae and aerial mycelium that differentiates into flexuous spore chains consisted of cylindrical spores

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69284	22599 ChEBI	arabinose	+	growth
68183	62968 ChEBI	cellulose	-	assimilation
69284	62968 ChEBI	cellulose	+	growth
68183	16919 ChEBI	creatine	-	nitrogen source
68183	15824 ChEBI	D-fructose	+	carbon source
68183	12936 ChEBI	D-galactose	+	carbon source
68183	17634 ChEBI	D-glucose	+	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68183	16899 ChEBI	D-mannitol	-	carbon source
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68183	16024 ChEBI	D-mannose	+	carbon source
68183	16988 ChEBI	D-ribose	-	carbon source
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68183	17924 ChEBI	D-sorbitol	-	carbon source
68183	65327 ChEBI	D-xylose	-	carbon source
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68183	4853 ChEBI	esculin	-	assimilation
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69284	28757 ChEBI	fructose	+	growth
68183	16813 ChEBI	galactitol	-	carbon source
68183	5291 ChEBI	gelatin	-	hydrolysis
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69284	17234 ChEBI	glucose	+	growth
68183	15428 ChEBI	glycine	+	nitrogen source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69284	17268 ChEBI	inositol	+	growth
68183	16977 ChEBI	L-alanine	+	nitrogen source
68183	30849 ChEBI	L-arabinose	+	carbon source
68183	90350 ChEBI	L-arginine-2-naphthylamide	+	nitrogen source
68183	17196 ChEBI	L-asparagine	+	nitrogen source
68183	29991 ChEBI	L-aspartate	+	nitrogen source
68183	29985 ChEBI	L-glutamate	-	nitrogen source
68183	18050 ChEBI	L-glutamine	+	nitrogen source
68183	17203 ChEBI	L-proline	+	nitrogen source
68183	62345 ChEBI	L-rhamnose	+	carbon source
68183	17115 ChEBI	L-serine	+	nitrogen source
68183	16857 ChEBI	L-threonine	-	nitrogen source
68183	17895 ChEBI	L-tyrosine	-	nitrogen source
68183	17716 ChEBI	lactose	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68183	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69284	37684 ChEBI	mannose	+	growth
68183		milk	-	assimilation
68183	17268 ChEBI	myo-inositol	+	carbon source
68183	17632 ChEBI	nitrate	-	reduction
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
68183	16634 ChEBI	raffinose	+	carbon source
69284	16634 ChEBI	raffinose	+	growth
69284	26546 ChEBI	rhamnose	+	growth
68183	28017 ChEBI	starch	-	hydrolysis
68183	17992 ChEBI	sucrose	+	carbon source
69284	17992 ChEBI	sucrose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68183	53424 ChEBI	tween 20	-	hydrolysis
68183	53423 ChEBI	tween 40	-	hydrolysis
68183	53426 ChEBI	tween 80	-	hydrolysis
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69284	18222 ChEBI	xylose	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68183	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68183	catalase	-	1.11.1.6
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68183	urease	-	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

68183

Fatty acid	Percentage
C16:0	33.2
C18:1 w9c	13.8
C16:0 iso	10.5
C17:0	10.1
C19:0 10-methly	9.7
C18:0	9.7
C17:1 w7c	5.5
C18:0 10-methly	3.3
C15:0 iso	2.8
C16:1 w7c	1.4

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69284	+	-	-	-	-	-	-	+	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69284	not determinedn.d.	+/-	+	+	+/-	+	+	+/-	-	-	+	+	-	+/-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
66400	soil	Logone riverbank, N’Djamena (12° 06' N, 15° 03' E)	Chad	TCD	Africa	12.1	15.05 12.1/15.05
68183	muddy soil collected from Logone riverbank	N'Djamena	Chad	TCD	Africa	12.1	15.05 12.1/15.05	sodium succinate-asparagine agar	21 days	28

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
68183	ASM342869v1 assembly for Actinomadura logoneensis NEAU-G17	contig	GCA_003428695	2293572.4	2841009013	2293572

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66400	Actinomadura logoneensis strain NEAU-G17 16S ribosomal RNA gene, partial sequence	MG189967	1520		1989

GC content

@ref	GC-content (mol%)	Method
66400	73.1	sequence analysis
68183	73.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomadura logoneensis NEAU-G17
NCBI: GCA_003428695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.40	no
125439	motility	BacteriaNetⓘ	no	89.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.	Hu J, Han C, Yu B, Zhao J, Guo X, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003819	2020
Phylogeny	Actinomadura logoneensis sp. nov., a novel actinomycete isolated from the soil.	Shi L, Han L, Guo X, Zhao J, Wang J, Wang H, Jiang S, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003579	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66400	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105122
#68183	Linlin Shi, Liyuan Han, Xiaowei Guo, Junwei Zhao, Jiabin Wang, Han Wang, Shanwen Jiang, Wensheng Xiang and Xiangjing Wang: Actinomadura logoneensis sp. nov., a novel actinomycete isolated from the soil. IJSEM 69: 2914 - 2920 2019 ( DOI 10.1099/ijsem.0.003579 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69284	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura logoneensis (DSM 105122, CGMCC 4.7411, NEAU-G17)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile?

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003428695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media

Fatty acid profile