Megamonas funiformis (DSM 103915, Marseille-P3344)

Name: Megamonas funiformis (DSM 103915, Marseille-P3344)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159539

Type strain

Culture col. no. DSM 103915 Marseille-P3344

NCBI tax ID(s) 437897

Special Collections DSMZ Cadoret human gut

History <- F. Cadoret, CHU Hopital de la Timone, Fédération de Bactériologie Virologie Hygiène Hospitalière; Marseille-P3344

Links

Megamonas funiformis DSM 103915 is a bacterium that was isolated from stool sample.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398947

DSM 103915

@ref 20215

Last LPSN update 2026-02-09 11:38:39

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Selenomonadaceae

Genus Megamonas

Species Megamonas funiformis

Full scientific name Megamonas funiformis Sakon et al. 2008

BacDive ID	Other strains from **Megamonas funiformis** (2)	Type strain
17126	M. funiformis YITM815, DSM 19343, JCM 14723 (type strain)
160651	M. funiformis Cla-CZ-129, DSM 110965

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66365	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
66365	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
66365	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	98.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66365	stool sample	Marseille	France	FRA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66365	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB18027 assembly for Megamonas funiformis Marseille-P3344	scaffold	GCA_900128435	2842967777	437897	65.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Megamonas sp. Marseille-P3344 partial 16S rRNA gene, strain Marseille-P3344	LT628480	1518		437897

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Megamonas funiformis Marseille-P3344T
NCBI: GCA_900128435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.80	no
125439	motility	BacteriaNetⓘ	no	61.10	no
125439	gram_stain	BacteriaNetⓘ	positive	77.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Megamonas funiformis Marseille-P3344
NCBI: GCA_900128435.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	89.62	no
125438	anaerobic	anaerobicⓘ	yes	89.51	no
125438	aerobic	aerobicⓘ	no	94.89	no
125438	spore-forming	spore-formingⓘ	no	82.88	no
125438	thermophilic	thermophileⓘ	no	90.44	no
125438	flagellated	motile2+ⓘ	no	83.91	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Megamonas funiformis Strain Marseille-P3344, Isolated from a Human Fecal Microbiota.	Maaloum M, Diop A, Ndongo S, Nguyen TT, Cadoret F, Raoult D, Fournier PE	Genome Announc	10.1128/genomeA.01459-17	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66365	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103915
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Megamonas funiformis (DSM 103915, Marseille-P3344)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900128435

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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