Name: Frankia soli DDB000320
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159517

Type strain:

Species: Frankia soli

Strain Designation: DDB000320, Cj

Culture col. no.: DSM 100623, NRRL B-16219, CECT 9041

Strain history: <- M. Gtari,Faculté des sciences de Tunis, Tunesia; NRRL B-16219 <- D. D. Baker

NCBI tax ID(s): 2599596 (species)

Special Collections

DSMZ

Section

Frankia soli DDB000320 is a bacterium that was isolated from Ceanothus jepsonii .

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Frankiales*
	Family	*Frankiaceae*
	Genus	*Frankia*
	Species	**Frankia soli**
	Full Scientific Name (LPSN)	Frankia soli Gtari et al. 2020

Synonym

Parafrankia soli

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66342]

Culture medium

BAP+ MEDIUM FOR FRANKIA (DSMZ Medium 1536)

[Ref.: #66342]

Culture medium growth

[Ref.: #66342]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66342]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66342]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66342]	Sample type/isolated from	Ceanothus jepsonii (Rhizosphere)
[Ref.: #66342]	Host species	Ceanothus jepsonii
[Ref.: #66342]	Geographic location (country and/or sea, region)	Wyoming
[Ref.: #66342]	Country	USA
[Ref.: #66342]	Country ISO 3 Code	USA
[Ref.: #66342]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Rhizosphere
#Host	#Plants	#Shrub (Scrub)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN238860 (>99% sequence identity) for Frankia from Microbeatlas

Aquatic Samples	34
Soil Samples	283
Animal Samples	148
Plant Samples	36
Total Samples	501

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66342]	Parafrankia soli strain Cj 16S ribosomal RNA gene, partial sequence	MN238860	1456	GenBank ENA	2599596 tax ID

[Ref.: #66342]

GC-content

71.1 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #66342]

Culture collection no.

DSM 100623, NRRL B-16219, CECT 9041

Literature:

Topic	Title	Authors	Journal	DOI	Year
Proteome	Effect of actinorhizal root exudates on the proteomes of Frankia soli NRRL B-16219, a strain colonizing the root tissues of its actinorhizal host via intercellular pathway.	Gueddou A, Sarker I, Sen A, Ghodhbane-Gtari F, Benson DR, Armengaud J, Gtari M	Res Microbiol	10.1016/j.resmic.2021.103900	2021	*
Phylogeny	Frankia soli sp. nov., an actinobacterium isolated from soil beneath Ceanothus jepsonii.	Gtari M, Ghodhbane-Gtari F, Nouioui I	Int J Syst Evol Microbiol	10.1099/ijsem.0.003899	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66342

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100623

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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