Name: Roseivirga misakiensis SK-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159410

Type strain:

Species: Roseivirga misakiensis

Strain Designation: SK-8

Culture col. no.: DSM 102187, KCTC 32969, NBRC 110216

Strain history: <- Koji HAMASAKI, Univ. of Tokyo

NCBI tax ID(s): 1563681 (species)

SI-ID 403523

DSM 102187

Section

Roseivirga misakiensis SK-8 is an aerobe, psychrophilic, rod-shaped bacterium that was isolated from From seawater, coastal surface water of Misaki.

rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Roseivirgaceae*
	Genus	*Roseivirga*
	Species	**Roseivirga misakiensis**
	Full Scientific Name (LPSN)	Roseivirga misakiensis (Wong et al. 2015) García-López et al. 2020

Synonym

Fabibacter misakiensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #67771]	Flagellum arrangement	gliding

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67771]			growth	20 °C

[Ref.: #67771]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From seawater, coastal surface water of Misaki
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KM502320 (>99% sequence identity) for Roseivirga misakiensis subclade from Microbeatlas

Aquatic Samples	233
Soil Samples	13
Animal Samples	10
Plant Samples	3
Total Samples	259

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Fabibacter misakiensis 16S ribosomal RNA gene, partial sequence	KM502320	1419	ENA	1563681 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseivirga misakiensis SK-8	GCA_001747105	contig	GenBank	1563681 tax ID	*

[Ref.: #67771]

GC-content

39.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseivirga misakiensis SK-8 NCBI: GCA_001747105.1
[Ref.: #69480]	flagellated	no	96.803	yes
[Ref.: #69480]	gram-positive	no	97.276	no
[Ref.: #69480]	anaerobic	no	99.045	no
[Ref.: #69480]	aerobic	yes	89.275	no
[Ref.: #69480]	halophile	no	83.095	no
[Ref.: #69480]	spore-forming	no	94.343	no
[Ref.: #69480]	glucose-util	yes	86.352	no
[Ref.: #69480]	thermophile	no	95.504	no
[Ref.: #69480]	motile	no	89.811	no
[Ref.: #69480]	glucose-ferment	no	92.336	no

Availability in culture collections External links

[Ref.: #66233]

Culture collection no.

DSM 102187, KCTC 32969, NBRC 110216

[Ref.: #111905]

SI-ID 403523

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fabibacter misakiensis sp. nov., a marine bacterium isolated from coastal surface water.	Wong SK, Park S, Lee JS, Chul Lee K, Xavier Chiura H, Kogure K, Hamasaki K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000405	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66233

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102187

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111905

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403523.1 )

* These data were automatically processed and therefore are not curated

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