Helicobacter labacensis (DSM 108823, CRBIP111719, L9)

Name: Helicobacter labacensis (DSM 108823, CRBIP111719, L9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159402

Type strain

Strain Designation L9

Culture col. no. DSM 108823 CRBIP111719 L9 CRBIP 111719

NCBI tax ID(s) 2316079

Special Collections DSMZ CIP

History DSMZ <- I. Gruntar, Univ. Ljubljana, Slovenia; L9 <-

Links

Helicobacter labacensis L9 is a bacterium that was isolated from gastric mucosa of a stomach of a fox.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396922

DSM 108823

@ref 20215

Last LPSN update 2026-05-29 08:44:11

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Helicobacteraceae

Genus Helicobacter

Species Helicobacter labacensis

Full scientific name Helicobacter labacensis Gruntar et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.977

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66225	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
66225	HELICOBACTER MEDIUM (DSMZ Medium 1279)		Medium recipe at MediaDive	Name: HELICOBACTER MEDIUM (DSMZ Medium 1279) Composition: Brucella Broth 35.0 g/l Skirrow supplement Vitox Fetal bovine serum Demineralized water Amphotericin

Culture temp

@ref	Growth	Type	Temperature (°C)
66225	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.072

Spore formation

@ref	Spore formation	Confidence
125439		99.078
125438		94.058

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66225	gastric mucosa of a stomach of a fox	Lukovica pri Domzalah	Slovenia	SVN	Europe	46.167	14.7 46.167/14.7

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM366028v1 assembly for Helicobacter labacensis L9	contig	GCA_003660285	2316079.3	2316079	58.28

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66225	Helicobacter labacensis 16S ribosomal RNA gene, partial sequence	MH854508	1498		2316079

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM366028v1 assembly for Helicobacter labacensis L9
NCBI: GCA_003660285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	73.36	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.07	no
125439	motility	BacteriaNetⓘ	no	85.43	no
125439	spore_formation	BacteriaNetⓘ	no	99.08	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Helicobacter labacensis L9
NCBI: GCA_003660285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	no	77.88	no
125438	aerobic	aerobicⓘ	no	87.17	no
125438	spore-forming	spore-formingⓘ	no	94.06	no
125438	thermophilic	thermophileⓘ	no	83.94	yes
125438	flagellated	motile2+ⓘ	no	52.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes).	Gruntar I, Papic B, Pate M, Zajc U, Ocepek M, Kusar D	Int J Syst Evol Microbiol	10.1099/ijsem.0.004050	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66225	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108823
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Helicobacter labacensis (DSM 108823, CRBIP111719, L9)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003660285

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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