Name: Paenibacillus ottowii MS2379
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159376

Type strain:

Species: Paenibacillus ottowii

Strain Designation: MS2379

Culture col. no.: DSM 107750, ATCC TSD-165

Strain history: <- A. Welsh, Agricen Sciences; MS2379 <- S. Rajbanshi

NCBI tax ID(s): 2315729 (species)

SI-ID 406424

DSM 107750

Section

Paenibacillus ottowii MS2379 is a facultative anaerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from anaerobic fermentation system processing bovine manure on quarter-strength tryptic soy agar from pasteurized sample solution.

colony-forming
Gram-variable
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus ottowii**
	Full Scientific Name (LPSN)	Paenibacillus ottowii Velazquez et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69485]	Gram stain	variable

[Ref.: #69485]	Cell length	3-6 µm

[Ref.: #69485]	Cell width	0.6-0.8 µm

[Ref.: #69485]	Cell shape	rod-shaped

[Ref.: #69485]	Motility	yes

[Ref.: #69485]	Colony size	1-5 mm
[Ref.: #69485]	Colony color	white to cream
[Ref.: #69485]	Colony shape	circular
[Ref.: #69485]	Incubation period	3 days
[Ref.: #69485]	Cultivation medium used	quarter strength TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66199]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #66199]

Culture medium growth

[Ref.: #66199]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66199]

Culture medium composition

expand / minimize

[Ref.: #69485]

Culture medium

quarter strength TSA

[Ref.: #69485]

Culture medium growth

		Temperature
[Ref.: #66199]	growth	30 °C
[Ref.: #69485]	growth	10-45 °C
[Ref.: #69485]	optimum	30 °C

[Ref.: #66199]	Temperature range	mesophilic
[Ref.: #69485]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69485]			optimum	7
[Ref.: #69485]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69485]

Oxygen tolerance

facultative anaerobe

[Ref.: #69485]	Spore description	sub-terminal, ellipsoidal deforming endospores that swell the sporangia
[Ref.: #69485]	Type of spore	endospore
[Ref.: #69485]	Ability of spore formation	yes

	Salt	Tested relation		Salt conc.
[Ref.: #69485]	NaCl		growth	0-3	%
[Ref.: #69485]	NaCl	no	growth	4	%
[Ref.: #69485]	NaCl		optimum	0	%

[Ref.: #69485]

Observation

Polar lipids found were lipids, glycolipids, aminolipids, phosphatidylglycerol, phosphatidylethanolamine, aminoglycolipid, diphosphatidylglycerol, phosphatidylmethylethanolamine.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69485]	amygdalin ChEBI	+	builds acid from
[Ref.: #69485]	amygdalin ChEBI	+	growth
[Ref.: #69485]	arbutin ChEBI	+	builds acid from
[Ref.: #69485]	arbutin ChEBI	+	growth
[Ref.: #69485]	beta-gentiobiose ChEBI	+	builds acid from
[Ref.: #69485]	beta-gentiobiose ChEBI	+	growth
[Ref.: #69485]	casein	+	hydrolysis
[Ref.: #69485]	cellobiose ChEBI	+	builds acid from
[Ref.: #69485]	cellobiose ChEBI	+	growth
[Ref.: #69485]	citrate ChEBI	-	assimilation
[Ref.: #69485]	D-arabinose ChEBI	-	builds acid from
[Ref.: #69485]	D-fructose ChEBI	+	builds acid from
[Ref.: #69485]	D-fructose ChEBI	+	growth
[Ref.: #69485]	D-fucose ChEBI	-	builds acid from
[Ref.: #69485]	D-galactose ChEBI	+	builds acid from
[Ref.: #69485]	D-galactose ChEBI	+	growth
[Ref.: #69485]	D-glucose ChEBI	+	builds acid from
[Ref.: #69485]	D-glucose ChEBI	+	growth
[Ref.: #69485]	D-lyxose ChEBI	-	builds acid from
[Ref.: #69485]	D-mannose ChEBI	+	builds acid from
[Ref.: #69485]	D-mannose ChEBI	+	growth
[Ref.: #69485]	D-tagatose ChEBI	-	builds acid from
[Ref.: #69485]	D-xylose ChEBI	+	builds acid from
[Ref.: #69485]	D-xylose ChEBI	+	growth
[Ref.: #69485]	erythritol ChEBI	-	builds acid from
[Ref.: #69485]	esculin ChEBI	+	builds acid from
[Ref.: #69485]	esculin ChEBI	+	growth
[Ref.: #69485]	galactitol ChEBI	-	builds acid from
[Ref.: #69485]	gelatin ChEBI	+	hydrolysis
[Ref.: #69485]	glucose ChEBI	+	fermentation
[Ref.: #69485]	glycerol ChEBI	+	builds acid from
[Ref.: #69485]	glycerol ChEBI	+	growth
[Ref.: #69485]	glycogen ChEBI	+	builds acid from
[Ref.: #69485]	glycogen ChEBI	+	growth
[Ref.: #69485]	inulin ChEBI	-	builds acid from
[Ref.: #69485]	L-arabinose ChEBI	+	builds acid from
[Ref.: #69485]	L-arabinose ChEBI	+	growth
[Ref.: #69485]	L-arabitol ChEBI	-	builds acid from
[Ref.: #69485]	L-fucose ChEBI	-	builds acid from
[Ref.: #69485]	L-sorbose ChEBI	-	builds acid from
[Ref.: #69485]	L-xylose ChEBI	-	builds acid from
[Ref.: #69485]	lactose ChEBI	+	builds acid from
[Ref.: #69485]	lactose ChEBI	+	growth
[Ref.: #69485]	maltose ChEBI	+	builds acid from
[Ref.: #69485]	maltose ChEBI	+	growth
[Ref.: #69485]	mannitol ChEBI	+	builds acid from
[Ref.: #69485]	mannitol ChEBI	+	growth
[Ref.: #69485]	melezitose ChEBI	-	builds acid from
[Ref.: #69485]	melibiose ChEBI	+	builds acid from
[Ref.: #69485]	melibiose ChEBI	+	growth
[Ref.: #69485]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #69485]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #69485]	methyl beta-D-xylopyranoside ChEBI	+	growth
[Ref.: #69485]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #69485]	methyl D-glucoside ChEBI	+	growth
[Ref.: #69485]	myo-inositol ChEBI	-	builds acid from
[Ref.: #69485]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #69485]	nitrate ChEBI	+	reduction
[Ref.: #69485]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #69485]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #69485]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #69485]	raffinose ChEBI	+	builds acid from
[Ref.: #69485]	raffinose ChEBI	+	growth
[Ref.: #69485]	rhamnose ChEBI	-	builds acid from
[Ref.: #69485]	ribitol ChEBI	-	builds acid from
[Ref.: #69485]	ribose ChEBI	+	builds acid from
[Ref.: #69485]	ribose ChEBI	+	growth
[Ref.: #69485]	salicin ChEBI	+	builds acid from
[Ref.: #69485]	salicin ChEBI	+	growth
[Ref.: #69485]	sorbitol ChEBI	-	builds acid from
[Ref.: #69485]	starch ChEBI	+	builds acid from
[Ref.: #69485]	starch ChEBI	+	growth
[Ref.: #69485]	starch ChEBI	+	hydrolysis
[Ref.: #69485]	sucrose ChEBI	+	builds acid from
[Ref.: #69485]	sucrose ChEBI	+	growth
[Ref.: #69485]	trehalose ChEBI	+	builds acid from
[Ref.: #69485]	trehalose ChEBI	+	growth
[Ref.: #69485]	turanose ChEBI	+	builds acid from
[Ref.: #69485]	turanose ChEBI	+	growth
[Ref.: #69485]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69485]		acetoin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #69485]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #69485]	catalase	+	1.11.1.6
[Ref.: #69485]	cytochrome oxidase	-	1.9.3.1
[Ref.: #69485]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66199]	Sample type/isolated from	anaerobic fermentation system processing bovine manure on quarter-strength tryptic soy agar (TSA Difco) from pasteurized sample solution
[Ref.: #66199]	Geographic location (country and/or sea, region)	Pilot Point, Texas
[Ref.: #66199]	Country	USA
[Ref.: #66199]	Country ISO 3 Code	USA
[Ref.: #66199]	Continent	North America

[Ref.: #69485]	Sample type/isolated from	Solution sample from predominantly anaerobic bovine manure fermentation System
[Ref.: #69485]	Geographic location (country and/or sea, region)	Pilot Point, Texas
[Ref.: #69485]	Country	USA
[Ref.: #69485]	Country ISO 3 Code	USA
[Ref.: #69485]	Continent	North America
[Ref.: #69485]	Enrichment culture	quarter-strength TSA Difco
[Ref.: #69485]	Enrichment culture duration	7days
[Ref.: #69485]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MH842737 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	744
Soil Samples	4375
Animal Samples	2534
Plant Samples	2012
Total Samples	9665

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66199]	Paenibacillus sp. MS2379 16S ribosomal RNA gene, partial sequence	MH842737	1476	ENA	2315729 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69485]	genome sequence	VIJZ00000000		GenBank	2315729 tax ID
[Ref.: #66792]	Paenibacillus ottowii MS2379	GCA_006874425	contig	GenBank	2315729 tax ID	*
[Ref.: #66792]	Paenibacillus sp. MS2379	2315729.3	wgs	PATRIC	2315729 tax ID	*

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GC-content

45.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus sp. MS2379 PATRIC: 2315729.3
[Ref.: #69480]	motile	yes	88.084	no
[Ref.: #69480]	gram-positive	yes	86.603	no
[Ref.: #69480]	anaerobic	no	97.159	no
[Ref.: #69480]	aerobic	yes	80.67	no
[Ref.: #69480]	halophile	no	91.361	no
[Ref.: #69480]	spore-forming	yes	96.565	no
[Ref.: #69480]	glucose-util	yes	92.089	no
[Ref.: #69480]	flagellated	yes	70.94	no
[Ref.: #69480]	thermophile	no	99.754	no
[Ref.: #69480]	glucose-ferment	no	63.841	no

Availability in culture collections External links

[Ref.: #66199]

Culture collection no.

DSM 107750, ATCC TSD-165

[Ref.: #111871]

SI-ID 406424

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure.	Velazquez LF, Rajbanshi S, Guan S, Hinchee M, Welsh A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003672	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66199

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107750

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69485

Ye-Ji Hwang, Jin-Soo Son, Soo-Yeong Lee, Yuxi He, YoungJae Jo, Jae-Ho Shin, Sa-Youl Ghim: Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003672 )

#111871

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406424.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus sp. MS2379

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