Paenibacillus ottowii (DSM 107750, MS2379, ATCC TSD-165)

Name: Paenibacillus ottowii (DSM 107750, MS2379, ATCC TSD-165)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159376

Type strain

Strain Designation MS2379

Culture col. no. DSM 107750 MS2379 ATCC TSD-165

NCBI tax ID(s) 2315729

Special Collections DSMZ Literature strains

History <- A. Welsh, Agricen Sciences; MS2379 <- S. Rajbanshi

Links

Paenibacillus ottowii MS2379 is a facultative anaerobe, spore-forming, mesophilic prokaryote that forms circular colonies and was isolated from anaerobic fermentation system processing bovine manure on quarter-strength tryptic soy agar from pasteurized sample solution.

spore-forming Gram-variable motile rod-shaped colony-forming facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406424

ATCC TSD-165,DSM 107750

@ref 20215

Last LPSN update 2026-02-09 11:38:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus ottowii

Full scientific name Paenibacillus ottowii Velázquez et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
69485	variable	3-6 µm	0.6-0.8 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
69485	1-5 mm	white to cream	circular	3 days	quarter strength TSA

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66199	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
69485	quarter strength TSA

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66199	positive	growth	30	mesophilic
69485	positive	growth	10-45
69485	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH
69485	positive	optimum	7
69485	positive	growth	6-10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69485	facultative anaerobe
125439	obligate aerobe	92

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
125439				91
69485	sub-terminal, ellipsoidal deforming endospores that swell the sporangia	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69485	NaCl	positive	growth	0-3 %
69485	NaCl		growth	4 %
69485	NaCl	positive	optimum	0 %

Observation

69485

ObservationPolar lipids found were lipids, glycolipids, aminolipids, phosphatidylglycerol, phosphatidylethanolamine, aminoglycolipid, diphosphatidylglycerol, phosphatidylmethylethanolamine.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69485	27613 ChEBI	amygdalin	+	builds acid from
69485	27613 ChEBI	amygdalin	+	growth
69485	18305 ChEBI	arbutin	+	builds acid from
69485	18305 ChEBI	arbutin	+	growth
69485	71422 ChEBI	beta-gentiobiose	+	builds acid from
69485	71422 ChEBI	beta-gentiobiose	+	growth
69485		casein	+	hydrolysis
69485	17057 ChEBI	cellobiose	+	builds acid from
69485	17057 ChEBI	cellobiose	+	growth
69485	16947 ChEBI	citrate	-	assimilation
69485	17108 ChEBI	D-arabinose	-	builds acid from
69485	15824 ChEBI	D-fructose	+	builds acid from
69485	15824 ChEBI	D-fructose	+	growth
69485	28847 ChEBI	D-fucose	-	builds acid from
69485	12936 ChEBI	D-galactose	+	builds acid from
69485	12936 ChEBI	D-galactose	+	growth
69485	17634 ChEBI	D-glucose	+	builds acid from
69485	17634 ChEBI	D-glucose	+	growth
69485	62318 ChEBI	D-lyxose	-	builds acid from
69485	16024 ChEBI	D-mannose	+	builds acid from
69485	16024 ChEBI	D-mannose	+	growth
69485	16443 ChEBI	D-tagatose	-	builds acid from
69485	65327 ChEBI	D-xylose	+	builds acid from
69485	65327 ChEBI	D-xylose	+	growth
69485	17113 ChEBI	erythritol	-	builds acid from
69485	4853 ChEBI	esculin	+	builds acid from
69485	4853 ChEBI	esculin	+	growth
69485	16813 ChEBI	galactitol	-	builds acid from
69485	5291 ChEBI	gelatin	+	hydrolysis
69485	17234 ChEBI	glucose	+	fermentation
69485	17754 ChEBI	glycerol	+	builds acid from
69485	17754 ChEBI	glycerol	+	growth
69485	28087 ChEBI	glycogen	+	builds acid from
69485	28087 ChEBI	glycogen	+	growth
69485	15443 ChEBI	inulin	-	builds acid from
69485	30849 ChEBI	L-arabinose	+	builds acid from
69485	30849 ChEBI	L-arabinose	+	growth
69485	18403 ChEBI	L-arabitol	-	builds acid from
69485	18287 ChEBI	L-fucose	-	builds acid from
69485	17266 ChEBI	L-sorbose	-	builds acid from
69485	65328 ChEBI	L-xylose	-	builds acid from
69485	17716 ChEBI	lactose	+	builds acid from
69485	17716 ChEBI	lactose	+	growth
69485	17306 ChEBI	maltose	+	builds acid from
69485	17306 ChEBI	maltose	+	growth
69485	29864 ChEBI	mannitol	+	builds acid from
69485	29864 ChEBI	mannitol	+	growth
69485	6731 ChEBI	melezitose	-	builds acid from
69485	28053 ChEBI	melibiose	+	builds acid from
69485	28053 ChEBI	melibiose	+	growth
69485	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
69485	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from
69485	74863 ChEBI	methyl beta-D-xylopyranoside	+	growth
69485	37657 ChEBI	methyl D-glucoside	+	builds acid from
69485	37657 ChEBI	methyl D-glucoside	+	growth
69485	17268 ChEBI	myo-inositol	-	builds acid from
69485	506227 ChEBI	N-acetylglucosamine	-	builds acid from
69485	17632 ChEBI	nitrate	+	reduction
69485		potassium 2-dehydro-D-gluconate	-	builds acid from
69485		potassium 5-dehydro-D-gluconate	-	builds acid from
69485	32032 ChEBI	potassium gluconate	-	builds acid from
69485	16634 ChEBI	raffinose	+	builds acid from
69485	16634 ChEBI	raffinose	+	growth
69485	26546 ChEBI	rhamnose	-	builds acid from
69485	15963 ChEBI	ribitol	-	builds acid from
69485	33942 ChEBI	ribose	+	builds acid from
69485	33942 ChEBI	ribose	+	growth
69485	17814 ChEBI	salicin	+	builds acid from
69485	17814 ChEBI	salicin	+	growth
69485	30911 ChEBI	sorbitol	-	builds acid from
69485	28017 ChEBI	starch	+	builds acid from
69485	28017 ChEBI	starch	+	growth
69485	28017 ChEBI	starch	+	hydrolysis
69485	17992 ChEBI	sucrose	+	builds acid from
69485	17992 ChEBI	sucrose	+	growth
69485	27082 ChEBI	trehalose	+	builds acid from
69485	27082 ChEBI	trehalose	+	growth
69485	32528 ChEBI	turanose	+	builds acid from
69485	32528 ChEBI	turanose	+	growth
69485	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69485	15688 ChEBI	acetoin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
69485	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
69485	catalase	+	1.11.1.6
69485	cytochrome oxidase	-	1.9.3.1
69485	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	#Lab enrichment
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
66199	anaerobic fermentation system processing bovine manure on quarter-strength tryptic soy agar (TSA Difco) from pasteurized sample solution	Pilot Point, Texas	USA	USA	North America
69485	Solution sample from predominantly anaerobic bovine manure fermentation System	Pilot Point, Texas	USA	USA	North America	quarter-strength TSA Difco	7days	30

Taxonmaps

69479

Global distribution of 16S sequence MH842737 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	744
Soil Samples	4375
Animal Samples	2534
Plant Samples	2012
Total Samples	9665

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM687442v1 assembly for Paenibacillus ottowii MS2379	contig	GCA_006874425	2315729.3	3004970105	2315729	69.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66199	Paenibacillus ottowii 16S ribosomal RNA gene, partial sequence	MH842737	1476		2315729

GC content

@ref	GC-content (mol%)	Method
69485	45.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus ottowii MS2379
NCBI: GCA_006874425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	91.00	no
125439	motility	BacteriaNetⓘ	yes	85.40	no
125439	gram_stain	BacteriaNetⓘ	variable	82.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus sp. MS2379
PATRIC: 2315729.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	68.24	no
125438	anaerobic	anaerobicⓘ	no	93.11	yes
125438	spore-forming	spore-formingⓘ	yes	89.71	no
125438	aerobic	aerobicⓘ	no	63.66	no
125438	thermophilic	thermophileⓘ	no	93.69	yes
125438	flagellated	motile2+ⓘ	yes	84.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure.	Velazquez LF, Rajbanshi S, Guan S, Hinchee M, Welsh A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003672	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66199	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107750
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#69485	Ye-Ji Hwang, Jin-Soo Son, Soo-Yeong Lee, Yuxi He, YoungJae Jo, Jae-Ho Shin, Sa-Youl Ghim: Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003672 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paenibacillus ottowii (DSM 107750, MS2379, ATCC TSD-165)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_006874425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media