Paenibacillus piri (DSM 105496, KACC 19385, MS74)

Name: Paenibacillus piri (DSM 105496, KACC 19385, MS74)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159375

Type strain

Strain Designation MS74

Culture col. no. DSM 105496 KACC 19385 MS74

NCBI tax ID(s) 2547395

Special Collections DSMZ Literature strains

History <- J. Kim, Kyonggi University; MS74

Links

Paenibacillus piri MS74 is an aerobe, mesophilic, Gram-positive prokaryote that forms circular colonies and was isolated from soil, near Itaewon road.

Gram-positive motile rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399790

DSM 105496

@ref 20215

Last LPSN update 2026-02-09 11:38:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus piri

Full scientific name Paenibacillus piri Trinh and Kim 2020

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125439				93.3
69555	positive	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
69555	0.4-0.9 mm	white	circular	R2A MEDIUM (DSMZ Medium 830)

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66198	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
69555	R2A MEDIUM (DSMZ Medium 830)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66198	positive	growth	30	mesophilic
69555	positive	growth	10-35
69555	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH
69555	positive	optimum	6.5
69555	positive	growth	5.0-9.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
69555	aerobe
125439	aerobe	95.1

Spore formation

@ref	Spore formation	Confidence
125439		95.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69555	NaCl	positive	growth	0-3.0 %
69555	NaCl	positive	growth	0-1.0 %
69555	NaCl		growth	5 %

Observation

@ref	Observation
69555	The polar lipids profile contains diphosphatidylglycerol (DPG), phosphatidylglycerol (PG) and phosphatidylethanolamine (PE).
69555	Acid production from the remaining substrates is negative.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69555		3-O-methyl alpha-D-glucopyranoside	-	builds acid from
69555	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+	assimilation
69555	17128 ChEBI	adipate	-	assimilation
69555		casein	-	hydrolysis
69555	15824 ChEBI	D-fructose	+	builds acid from
69555	12936 ChEBI	D-galactose	+	builds acid from
69555	17634 ChEBI	D-glucose	+	assimilation
69555	17634 ChEBI	D-glucose	+	builds acid from
69555	16899 ChEBI	D-mannitol	-	assimilation
69555	16899 ChEBI	D-mannitol	-	builds acid from
69555	16024 ChEBI	D-mannose	+	assimilation
69555	16988 ChEBI	D-ribose	+	builds acid from
69555	65327 ChEBI	D-xylose	+	builds acid from
69555	27689 ChEBI	decanoate	-	assimilation
69555	16991 ChEBI	dna	-	hydrolysis
69555		esculin ferric citrate	+	assimilation
69555	5291 ChEBI	gelatin	-	hydrolysis
69555	28066 ChEBI	gentiobiose	-	builds acid from
69555	17754 ChEBI	glycerol	+	builds acid from
69555	35581 ChEBI	indole	-
69555	30849 ChEBI	L-arabinose	-	builds acid from
69555	30849 ChEBI	L-arabinose	+	assimilation
69555	62345 ChEBI	L-rhamnose	+	builds acid from
69555	25115 ChEBI	malate	-	assimilation
69555	17306 ChEBI	maltose	+	assimilation
69555	17306 ChEBI	maltose	+	builds acid from
69555	6731 ChEBI	melezitose	+	builds acid from
69555	28053 ChEBI	melibiose	+	builds acid from
69555		methyl alpha-D-xylopyranoside	+	builds acid from
69555	18401 ChEBI	phenylacetate	-	assimilation
69555	32032 ChEBI	potassium gluconate	+	assimilation
69555	16634 ChEBI	raffinose	+	builds acid from
69555	53258 ChEBI	sodium citrate	+	assimilation
69555	28017 ChEBI	starch	-	hydrolysis
69555	17992 ChEBI	sucrose	+	builds acid from
69555	27082 ChEBI	trehalose	+	builds acid from
69555	32528 ChEBI	turanose	+	builds acid from
69555	53423 ChEBI	tween 40	-	hydrolysis
69555	53425 ChEBI	tween 60	-	hydrolysis
69555	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69555	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
69555	acid phosphatase	-	3.1.3.2
69555	alpha-chymotrypsin	-	3.4.21.1
69555	alpha-fucosidase	-	3.2.1.51
69555	alpha-galactosidase	-	3.2.1.22
69555	alpha-glucosidase	+	3.2.1.20
69555	alpha-mannosidase	-	3.2.1.24
69555	beta-galactosidase	+	3.2.1.23
69555	beta-glucosidase	-	3.2.1.21
69555	beta-glucuronidase	-	3.2.1.31
69555	catalase	+	1.11.1.6
69555	cytochrome oxidase	+	1.9.3.1
69555	esterase (C 4)	+
69555	esterase Lipase (C 8)	+
69555	leucine arylamidase	+	3.4.11.1
69555	N-acetyl-beta-glucosaminidase	-	3.2.1.52
69555	naphthol-AS-BI-phosphohydrolase	+
69555	trypsin	-	3.4.21.4

Fatty acid profile

Metadata FA analysis

@ref

69555

Fatty acid	Percentage
C15:0 anteiso	52.4
C16:0	13.2
C15:0 iso	12.5
C16:0 iso	8.3
C17:0 anteiso	3.6
C14:0 iso	3.2
C17:0 iso	2.7
C10:0	1.3
C14:0	1.1
C8:0 3OH	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Built environment	#Transportation ways (Roads)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66198	soil, near Itaewon road	(37° 32' 6.4" N, 126° 58' 27.7" E)	Republic of Korea	KOR	Asia
69555	soil beside Itaewon road, Seoul	Itaewon road, Seoul	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KY445675 (>99% sequence identity) for Paenibacillus piri subclade from Microbeatlas

Aquatic Samples
Soil Samples	5
Animal Samples	8
Plant Samples	1
Total Samples	14

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM435404v1 assembly for Paenibacillus piri MS74	contig	GCA_004354045	2547395.4	2904181319	2547395	60.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66198	Paenibacillus piri 16S ribosomal RNA gene, partial sequence	KY445675	1511		2547395

GC content

@ref	GC-content (mol%)	Method
69555	51	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus piri MS74
NCBI: GCA_004354045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.50	no
125439	motility	BacteriaNetⓘ	yes	93.30	no
125439	gram_stain	BacteriaNetⓘ	variable	88.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus piri sp. nov., isolated from urban soil.	Trinh NH, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003811	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66198	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105496
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#69555	Ngoc Hoang Trinh and Jaisoo Kim: Paenibacillus piri sp. nov., isolated from urban soil. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003811 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus piri (DSM 105496, KACC 19385, MS74)

Name and taxonomic classification