Name: Paenibacillus rhizophilus 7197
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159374

Type strain:

Species: Paenibacillus rhizophilus

Strain Designation: 7197

Culture col. no.: DSM 103168, CGMCC 1.15699

Strain history: <- J. L. Gao, Beijing Academy of Agriculture and Forestry Science; 7197 <- J. Sun, Key Lab. of Microbial Resources, Ministry of Agriculture

NCBI tax ID(s): 1850366 (species)

SI-ID 404197

DSM 103168

Section

Paenibacillus rhizophilus 7197 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from rhizosphere soil of wheat.

colony-forming
Gram-variable
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus rhizophilus**
	Full Scientific Name (LPSN)	Paenibacillus rhizophilus Ripa et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68134]	Gram stain	variable

[Ref.: #68134]	Cell length	3.0-5.0 µm

[Ref.: #68134]	Cell width	0.5-0.6 µm

[Ref.: #68134]	Cell shape	rod-shaped

[Ref.: #68134]	Motility	yes

[Ref.: #68134]	Flagellum arrangement	polar

[Ref.: #68134]	Colony size	0.5 mm
[Ref.: #68134]	Colony color	whey-coloured
[Ref.: #68134]	Colony shape	circular
[Ref.: #68134]	Incubation period	3 days
[Ref.: #68134]	Cultivation medium used	Reasoner's 2A agar (R2A)

[Ref.: #68134]	Colony size	1.5-2.5 mm
[Ref.: #68134]	Colony color	cream-coloured
[Ref.: #68134]	Colony shape	circular
[Ref.: #68134]	Incubation period	3 days
[Ref.: #68134]	Cultivation medium used	Trypticase Soy Agar (TSA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66197]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #66197]

Culture medium growth

[Ref.: #66197]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66197]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #66197]	growth	30 °C
[Ref.: #68134]	growth	20-40 °C
[Ref.: #68134]	optimum	30 °C

[Ref.: #66197]	Temperature range	mesophilic
[Ref.: #68134]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68134]			optimum	7
[Ref.: #68134]			growth	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68134]

Oxygen tolerance

aerobe

[Ref.: #68134]	Spore description	Ellipsoidal subterminal
[Ref.: #68134]	Type of spore	endospore
[Ref.: #68134]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68134]		NaCl		growth	1.0-3.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68134]	1 % sodium lactate	+	growth
[Ref.: #68134]	adipate ChEBI	-	assimilation
[Ref.: #68134]	alpha-D-glucose ChEBI	+	growth
[Ref.: #68134]	amygdalin ChEBI	+	builds acid from
[Ref.: #68134]	arbutin ChEBI	+	builds acid from
[Ref.: #68134]	aztreonam ChEBI	+	growth
[Ref.: #68134]	cellobiose ChEBI	+	builds acid from
[Ref.: #68134]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68134]	D-fructose ChEBI	+	builds acid from
[Ref.: #68134]	D-fructose ChEBI	+	growth
[Ref.: #68134]	D-fucose ChEBI	-	builds acid from
[Ref.: #68134]	D-galactose ChEBI	+	builds acid from
[Ref.: #68134]	D-galactose ChEBI	+	growth
[Ref.: #68134]	D-glucose ChEBI	+	builds acid from
[Ref.: #68134]	D-glucose ChEBI	-	assimilation
[Ref.: #68134]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68134]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68134]	D-mannitol ChEBI	-	assimilation
[Ref.: #68134]	D-mannitol ChEBI	+	growth
[Ref.: #68134]	D-mannose ChEBI	+	builds acid from
[Ref.: #68134]	D-mannose ChEBI	+	assimilation
[Ref.: #68134]	D-mannose ChEBI	+	growth
[Ref.: #68134]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #68134]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68134]	dextrin ChEBI	+	growth
[Ref.: #68134]	esculin ChEBI	+	hydrolysis
[Ref.: #68134]	esculin ferric citrate	+	builds acid from
[Ref.: #68134]	gelatin ChEBI	-	hydrolysis
[Ref.: #68134]	gentiobiose ChEBI	+	builds acid from
[Ref.: #68134]	glucose ChEBI	-	fermentation
[Ref.: #68134]	glycogen ChEBI	+	builds acid from
[Ref.: #68134]	hexanoate ChEBI	-	assimilation
[Ref.: #68134]	inulin ChEBI	+	builds acid from
[Ref.: #68134]	L-arabinose ChEBI	-	assimilation
[Ref.: #68134]	L-arabitol ChEBI	+/-	builds acid from
[Ref.: #68134]	L-fucose ChEBI	-	builds acid from
[Ref.: #68134]	lactose ChEBI	+	builds acid from
[Ref.: #68134]	malate ChEBI	-	assimilation
[Ref.: #68134]	maltose ChEBI	+	builds acid from
[Ref.: #68134]	maltose ChEBI	-	assimilation
[Ref.: #68134]	melezitose ChEBI	+	builds acid from
[Ref.: #68134]	melibiose ChEBI	+	builds acid from
[Ref.: #68134]	melibiose ChEBI	+	growth
[Ref.: #68134]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68134]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #68134]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #68134]	methyl D-glucoside ChEBI	+	growth
[Ref.: #68134]	methyl pyruvate ChEBI	+	growth
[Ref.: #68134]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68134]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68134]	nalidixic acid ChEBI	+	growth
[Ref.: #68134]	nitrate ChEBI	-	reduction
[Ref.: #68134]	pectin ChEBI	+	growth
[Ref.: #68134]	phenylacetate ChEBI	-	assimilation
[Ref.: #68134]	potassium 2-dehydro-D-gluconate	+	builds acid from
[Ref.: #68134]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #68134]	potassium 5-dehydro-D-gluconate	+	growth
[Ref.: #68134]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #68134]	potassium gluconate ChEBI	-	assimilation
[Ref.: #68134]	raffinose ChEBI	+	builds acid from
[Ref.: #68134]	raffinose ChEBI	+	growth
[Ref.: #68134]	ribitol ChEBI	+	builds acid from
[Ref.: #68134]	salicin ChEBI	+	builds acid from
[Ref.: #68134]	sodium butyrate ChEBI	+	growth
[Ref.: #68134]	sodium citrate ChEBI	-	assimilation
[Ref.: #68134]	stachyose ChEBI	+	growth
[Ref.: #68134]	sucrose ChEBI	+	builds acid from
[Ref.: #68134]	sucrose ChEBI	+	growth
[Ref.: #68134]	trehalose ChEBI	+	builds acid from
[Ref.: #68134]	trehalose ChEBI	+	growth
[Ref.: #68134]	turanose ChEBI	+	builds acid from
[Ref.: #68134]	turanose ChEBI	+	growth
[Ref.: #68134]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68134]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68134]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #68134]	acid phosphatase	+	3.1.3.2
[Ref.: #68134]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68134]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #68134]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68134]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68134]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68134]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68134]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68134]	beta-galactosidase	+	3.2.1.23
[Ref.: #68134]	beta-glucosidase	+	3.2.1.21
[Ref.: #68134]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68134]	catalase	+	1.11.1.6
[Ref.: #68134]	cystine arylamidase	+	3.4.11.3
[Ref.: #68134]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68134]	esterase (C 4)	+
[Ref.: #68134]	esterase Lipase (C 8)	+
[Ref.: #68134]	leucine arylamidase	+	3.4.11.1
[Ref.: #68134]	lipase (C 14)	-
[Ref.: #68134]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68134]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68134]	trypsin	+	3.4.21.4
[Ref.: #68134]	urease	-	3.5.1.5
[Ref.: #68134]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68134]

Fatty acid	Percentage
C15:0 anteiso	52.3
C16:0	15.7
C15:0 iso	14.1
C16:0 iso	5.7
C14:0	3.1
C17:0 iso	2.8
C17:0 anteiso	2.7
C14:0 iso	2.3
C12:0	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66197]	Sample type/isolated from	rhizosphere soil of wheat
[Ref.: #66197]	Geographic location (country and/or sea, region)	Inner Mongulia
[Ref.: #66197]	Country	China
[Ref.: #66197]	Country ISO 3 Code	CHN
[Ref.: #66197]	Continent	Asia

[Ref.: #68134]	Sample type/isolated from	Rhizosphere of wheat
[Ref.: #68134]	Geographic location (country and/or sea, region)	Yakeshi County, Inner Mongolia
[Ref.: #68134]	Country	China
[Ref.: #68134]	Country ISO 3 Code	CHN
[Ref.: #68134]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68134]	Paenibacillus sp. 7197 16S ribosomal RNA gene, partial sequence	KX132137.2	1515	ENA	1850366 tax ID
[Ref.: #66197]	Paenibacillus sp. 7197 16S ribosomal RNA gene, partial sequence	KX132137	1515	ENA	1850366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68134]	Paenibacillus rhizophilus 7197	GCA_003854965	contig	GenBank	1850366 tax ID

[Ref.: #68134]

GC-content

51.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus rhizophilus 7197 NCBI: GCA_003854965.1
[Ref.: #69480]	motile	yes	87.917	no
[Ref.: #69480]	flagellated	yes	85.979	yes
[Ref.: #69480]	gram-positive	yes	78.494	yes
[Ref.: #69480]	anaerobic	no	85.911	no
[Ref.: #69480]	aerobic	yes	53.566	yes
[Ref.: #69480]	halophile	no	96.81	no
[Ref.: #69480]	spore-forming	yes	97.158	yes
[Ref.: #69480]	thermophile	no	99.563	yes
[Ref.: #69480]	glucose-util	yes	88.342	no
[Ref.: #69480]	glucose-ferment	no	82.287	no

Availability in culture collections External links

[Ref.: #66197]

Culture collection no.

DSM 103168, CGMCC 1.15699

[Ref.: #111869]

SI-ID 404197

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus rhizophilus sp. nov., a nitrogen-fixing bacterium isolated from the rhizosphere of wheat (Triticum aestivum L.).	Ripa FA, Tong S, Cao WD, Wang ET, Wang T, Liu HC, Gao JL, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.003472	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66197

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103168

#68134

Farhana Alam Ripa, Shuai Tong, Wei-dong Cao, En Tao Wang, Tianyu Wang, Hong Can Liu, Jun-lian Gao and Jian-guang Sun: Paenibacillus rhizophilus sp. nov., a nitrogen-fixing bacterium isolated from the rhizosphere of wheat (Triticum aestivum L.). IJSEM 69: 3689 - 3695 2019 ( DOI 10.1099/ijsem.0.003472 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111869

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404197.1 )

* These data were automatically processed and therefore are not curated

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