Schaalia hyovaginalis (DSM 106277, BSM-389-WT-23D)

Name: Schaalia hyovaginalis (DSM 106277, BSM-389-WT-23D)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159364

Type strain

Strain Designation BSM-389-WT-23D

Culture col. no. DSM 106277 BSM-389-WT-23D

NCBI tax ID(s) 29316

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; BSM-389-WT-23D

Links

Schaalia hyovaginalis BSM-389-WT-23D is an animal pathogen that was isolated from feces; pig, 8 weeks old, wild type.

animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399373

DSM 106277

@ref 20215

Last LPSN update 2026-05-29 08:44:10

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Schaalia

Species Schaalia hyovaginalis

Full scientific name Schaalia hyovaginalis (Collins et al. 1993) Nouioui et al. 2018

Synonyms (1)

Actinomyces hyovaginalis

BacDive ID	Other strains from **Schaalia hyovaginalis** (10)	Type strain
170	S. hyovaginalis BM 1192/5, DSM 10695, ATCC 51367, CIP 103923, ... (type strain)
135239	S. hyovaginalis CIP 103257, ATCC 27412
148532	S. hyovaginalis CCUG 35605
148612	S. hyovaginalis CCUG 35715
148613	S. hyovaginalis CCUG 35716
150052	S. hyovaginalis CCUG 38920
150053	S. hyovaginalis CCUG 38921
150727	S. hyovaginalis CCUG 42094
151986	S. hyovaginalis CCUG 45432
151987	S. hyovaginalis CCUG 45433

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91.725
125438		90.821	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66187	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66187	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	95.473

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66187	feces; pig, 8 weeks old, wild type	Munich	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537508 (>99% sequence identity) for Schaalia hyovaginalis subclade from Microbeatlas

Aquatic Samples	49
Soil Samples	53
Animal Samples	3091
Plant Samples	18
Total Samples	3211

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
66187		2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969570v1 assembly for Schaalia hyovaginalis BSM-389-WT-23D	contig	GCA_009695705	29316.3	8066620093	29316	77.84

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66187	Schaalia hyovaginalis strain DSM 106277 16S ribosomal RNA gene, partial sequence	MN537508	1538		29316

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969570v1 assembly for Schaalia hyovaginalis BSM-389-WT-23D
NCBI: GCA_009695705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.47	no
125439	gram_stain	BacteriaNetⓘ	positive	89.06	no
125439	spore_formation	BacteriaNetⓘ	no	69.32	no
125439	motility	BacteriaNetⓘ	no	85.93	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Schaalia hyovaginalis strain BSM-389-WT-23D
PATRIC: 29316.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.82	no
125438	anaerobic	anaerobicⓘ	no	71.64	no
125438	spore-forming	spore-formingⓘ	no	88.52	no
125438	thermophilic	thermophileⓘ	no	95.49	yes
125438	aerobic	aerobicⓘ	no	76.65	no
125438	flagellated	motile2+ⓘ	no	91.73	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66187	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106277
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us