Name: Pseudomonas inefficax CFB 8493
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159358

Type strain:

Species: Pseudomonas inefficax

Strain Designation: CFB 8493, JV551A3

Culture col. no.: DSM 108619

Strain history: <- D. Muller, Université de Lyon, Villeurbanne, France; JV551A3 <- J. Vacheron, Université Claude Bernard, Lyon, France; JV551A3

NCBI tax ID(s): 2078786 (species)

SI-ID 407375

DSM 108619

Section

Pseudomonas inefficax CFB 8493 is a mesophilic bacterium that was isolated from maize rhizospheric soil.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas inefficax**
	Full Scientific Name (LPSN)	Pseudomonas inefficax Keshavarz-Tohid et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66181]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #66181]

Culture medium growth

[Ref.: #66181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66181]

Culture medium composition

expand / minimize

[Ref.: #66181]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #66181]

Culture medium growth

[Ref.: #66181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66181]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66181]			growth	28 °C

[Ref.: #66181]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66181]	Sample type/isolated from	maize rhizospheric soil
[Ref.: #66181]	Geographic location (country and/or sea, region)	Béligneux "AIN 01" (45° 52' 18.9'' N, 5° 07' 18.2'' E)
[Ref.: #66181]	Country	France
[Ref.: #66181]	Country ISO 3 Code	FRA
[Ref.: #66181]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas inefficax JV551A3	GCA_900277125	contig	GenBank	2078786 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas inefficax JV551A3 NCBI: GCA_900277125.1
[Ref.: #69480]	flagellated	yes	85.728	no
[Ref.: #69480]	gram-positive	no	98.577	no
[Ref.: #69480]	anaerobic	no	98.109	no
[Ref.: #69480]	aerobic	yes	93.329	no
[Ref.: #69480]	halophile	no	85.089	no
[Ref.: #69480]	spore-forming	no	95.154	no
[Ref.: #69480]	thermophile	no	99.879	no
[Ref.: #69480]	glucose-util	yes	91.882	no
[Ref.: #69480]	motile	yes	92.232	no
[Ref.: #69480]	glucose-ferment	no	87.81	no

Availability in culture collections External links

[Ref.: #66181]

Culture collection no.

DSM 108619

[Ref.: #111855]

SI-ID 407375

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov.	Keshavarz-Tohid V, Vacheron J, Dubost A, Prigent-Combaret C, Taheri P, Tarighi S, Taghavi SM, Moenne-Loccoz Y, Muller D	Syst Appl Microbiol	10.1016/j.syapm.2019.04.004	2019	*
Genetics	Draft genome sequence data of a 4-nitrophenol- degrading bacterium, Pseudomonas alloputida strain PNP.	Arora PK, Saroj RS, Mishra R, Omar RA, Kumari P, Srivastava A, Garg SK, Singh VP	Data Brief	10.1016/j.dib.2021.107390	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108619

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111855

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407375.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas inefficax JV551A3

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