Name: Citrobacter cronae Tue2-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159353

Type strain:

Species: Citrobacter cronae

Strain Designation: Tue2-1

Culture col. no.: DSM 110040, CCUG 73860

Strain history: <- P. Oberhettinger; Universitätsklinikum Tübingen; Tue2-1

NCBI tax ID(s): 1748967 (species)

SI-ID 407996

DSM 110040

Special Collections

DSMZ
CCUG

Section

Citrobacter cronae Tue2-1 is a mesophilic bacterium that was isolated from human rectal swab.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Citrobacter*
	Species	**Citrobacter cronae**
	Full Scientific Name (LPSN)	Citrobacter cronae Oberhettinger et al. 2020

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66176]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #66176]

Culture medium growth

[Ref.: #66176]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66176]

Culture medium composition

expand / minimize

[Ref.: #66176]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #66176]

Culture medium growth

[Ref.: #66176]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66176]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66176]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66176]	Sample type/isolated from	human rectal swab
[Ref.: #66176]	Geographic location (country and/or sea, region)	Universitätsklinikum Tübingen
[Ref.: #66176]	Country	Germany
[Ref.: #66176]	Country ISO 3 Code	DEU
[Ref.: #66176]	Continent	Europe
[Ref.: #66176]	Geographic location	48.5306°/9.0399°
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Rectum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN548424 (>99% sequence identity) for Citrobacter from Microbeatlas

Aquatic Samples	7413
Soil Samples	3252
Animal Samples	52478
Plant Samples	2947
Total Samples	66090

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66176]	Citrobacter cronae 16S ribosomal RNA gene, partial sequence	MN548424	1462	GenBank ENA	1748967 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Citrobacter cronae Tue2-1	GCA_008802955	contig	GenBank ENA	1748967 tax ID	*
[Ref.: #66792]	Citrobacter cronae Tue2-1	2906149884	draft	JGI IMG/M	1748967 tax ID	*

Availability in culture collections External links

[Ref.: #66176]

Culture collection no.

DSM 110040, CCUG 73860

[Ref.: #111850]

SI-ID 407996

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Citrobacter cronae sp. nov., isolated from human rectal swabs and stool samples.	Oberhettinger P, Schule L, Marschal M, Bezdan D, Ossowski S, Dorfel D, Vogel W, Rossen JW, Willmann M, Peter S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004100	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66176

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110040

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111850

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407996.1 )

* These data were automatically processed and therefore are not curated

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