Name: Bifidobacterium felsineum DSM 103139
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159317

Type strain:

Species: Bifidobacterium felsineum

Culture col. no.: DSM 103139, JCM 31789, TRE H

Strain history: P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; TRE H.

NCBI tax ID(s): 2045440 (species)

SI-ID 407942

DSM 103139

Section

Bifidobacterium felsineum DSM 103139 is an anaerobe, mesophilic bacterium that was isolated from Faeces of Saguinus oedipus.

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium felsineum**
	Full Scientific Name (LPSN)	Bifidobacterium felsineum Modesto et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.255

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66140]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #66140]

Culture medium growth

[Ref.: #66140]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66140]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66140]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #66140]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.998

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66140]	Sample type/isolated from	Faeces of Saguinus oedipus
[Ref.: #66140]	Geographic location (country and/or sea, region)	Bussolengo (Verona)
[Ref.: #66140]	Country	Italy
[Ref.: #66140]	Country ISO 3 Code	ITA
[Ref.: #66140]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Feces of an adult subject of the cotton top tamarin (Saguinus oedipus) housed under semi-naturalconditions in Parco Natura Viva - Garda Zoological Park
[Ref.: #67770]	Host species	Saguinus oedipus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bussolengo, Verona
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Primates

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium felsineum TRE H	GCA_002802915	scaffold	GenBank	2045440 tax ID

[Ref.: #67770]

GC-content

58.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium felsineum TRE H NCBI: GCA_002802915.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium felsineum TRE H NCBI: GCA_002802915.1
[Ref.: #69480]	flagellated	no	95.979	no
[Ref.: #69480]	gram-positive	yes	94.52	no
[Ref.: #69480]	anaerobic	yes	97.648	no
[Ref.: #69480]	halophile	no	78.409	no
[Ref.: #69480]	spore-forming	no	96.027	no
[Ref.: #69480]	glucose-util	yes	86.197	no
[Ref.: #69480]	aerobic	no	93.808	no
[Ref.: #69480]	thermophile	no	93.839	yes
[Ref.: #69480]	motile	no	94.398	no
[Ref.: #69480]	glucose-ferment	yes	82.229	no

Availability in culture collections External links

[Ref.: #66140]

Culture collection no.

DSM 103139, JCM 31789, TRE H

[Ref.: #111816]

SI-ID 407942

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of the phylogenetic diversity of two novel species belonging to the genus Bifidobacterium: Bifidobacterium cebidarum sp. nov. and Bifidobacterium leontopitheci sp. nov.	Duranti S, Lugli GA, Viappiani A, Mancabelli L, Alessandri G, Anzalone R, Longhi G, Milani C, Ossiprandi MC, Turroni F, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004032	2020	*
Phylogeny	Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).	Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli P	Syst Appl Microbiol	10.1016/j.syapm.2018.07.005	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66140

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103139

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111816

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407942.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium felsineum TRE H

Bifidobacterium felsineum TRE H

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