Name: Bacteroides pyogenes 160
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1593

Type strain:

Species: Bacteroides pyogenes

Strain Designation: 160

Culture col. no.: DSM 19673, ATCC 43331, CCUG 25929, JCM 10003, NCTC 11853, VPB 160

Strain history: STAFF 1101 <-- ATCC 43331 <-- NCTC 11853 <-- D. N. Love VPB 160.

NCBI tax ID(s): 1235813 (strain), 310300 (species)

SI-ID 41777

ATCC 43331, NCTC 11853, CCUG 25929, JCM 10003, DSM 19673

Other strains from Bacteroides pyogenes

B. pyogenes P39-88, DSM 20611, ATCC 35418, ... (type strain)
B. pyogenes P 38024, CCUG 15420, CCM 3725, ...
B. pyogenes CCUG 57080
B. pyogenes CCUG 63581
B. pyogenes CCUG 65536

Section

Bacteroides pyogenes 160 is an anaerobe, mesophilic animal pathogen that was isolated from abscess of cat.

anaerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides pyogenes**
	Full Scientific Name (LPSN)	Bacteroides pyogenes Benno et al. 1983

	Synonym	Bacteroides tectus
	Synonym	Bacteroides tectum
	Synonym	Bacteroides suis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #69480]	Motility	no Confidence in %90.814

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8247]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8247]

Culture medium growth

[Ref.: #8247]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8247]

Culture medium composition

expand / minimize

[Ref.: #8247]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #8247]

Culture medium growth

[Ref.: #8247]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8247]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8247]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #8247]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8247]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.605

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #48298]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	30.3	14.711
C15:0 ISO	16.8	14.621
C15:0	11.5	15
C17:0 iso 3OH	8.9	18.161
unknown 13.566	6	13.566
C17:0 3OH	4	18.535
C15:0 3OH	3.1	16.504
C16:0	2.8	16
C18:2 ω6,9c/C18:0 ANTE	2.6	17.724
C16:0 3OH	2.5	17.52
C17:0 iso	1.9	16.629
C18:1 ω9c	1.7	17.769
C17:0 anteiso	1.6	16.722
C16:0 iso	1.2	15.626
Unidentified	1	18.262
C17:0	0.9	17
C13:0 iso	0.8	12.612
unknown 16.580	0.5	16.58
C15:0 ISO 3OH	0.4	16.135
C13:0 ANTEISO	0.4	12.701
C14:0	0.4	14
C16:0 iso 3OH	0.3	17.145
Unidentified	0.3	13.946
C13:0	0.3	13
C16:1 ω7c	0.2	15.819

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #48298]	5075	-	-	+	+	+	+	+	-	-	+	+	-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #8247]	12291	-	-	-	+	+	+	+	-	-	+	+	+	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #48298]	1385	-	+	+	-	-	-	-	-	-	-	+	+	-	+	-	+	-	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8247]	Sample type/isolated from	abscess of cat
[Ref.: #8247]	Country	Australia
[Ref.: #8247]	Country ISO 3 Code	AUS
[Ref.: #8247]	Continent	Australia and Oceania

[Ref.: #48298]	Sample type/isolated from	Cat,mammal abscess
[Ref.: #48298]	Country	Australia
[Ref.: #48298]	Country ISO 3 Code	AUS
[Ref.: #48298]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Subcutaneous fight wound abscess in cat
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Felidae (Cat)
#Host Body-Site	#Other	#Abscess

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8247]	Pathogenicity (animal)	yes
[Ref.: #8247]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8247]	Bacteroides pyogenes gene for 16S rRNA, partial sequence, strain: JCM 10003	AB200228	1458	ENA	310300 tax ID
[Ref.: #20218]	Bacteroides tectus strain JCM10003 16S ribosomal RNA gene, partial sequence	EU136689	2064	ENA	310300 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides pyogenes JCM 10003	GCA_000511775	contig	GenBank	1235813 tax ID
[Ref.: #66792]	Bacteroides pyogenes DSM 19673	GCA_014196225	scaffold	GenBank	310300 tax ID	*
[Ref.: #66792]	Bacteroides pyogenes JCM 10003	1235813.3	wgs	PATRIC	1235813 tax ID	*
[Ref.: #66792]	Bacteroides pyogenes strain DSM 19673	310300.28	wgs	PATRIC	310300 tax ID	*
[Ref.: #66792]	Bacteroides pyogenes strain NCTC11853	310300.9	wgs	PATRIC	310300 tax ID	*
[Ref.: #66792]	Bacteroides pyogenes NCTC 11853	2814123406	draft	JGI IMG/M	310300 tax ID	*

[Ref.: #8247]	GC-content	48 mol%
[Ref.: #67770]	GC-content	46.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	47 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacteroides pyogenes JCM 10003 PATRIC: 1235813.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides pyogenes JCM 10003 PATRIC: 1235813.3
[Ref.: #69480]	motile	no	92.206	no
[Ref.: #69480]	gram-positive	no	96.458	no
[Ref.: #69480]	anaerobic	yes	98.89	yes
[Ref.: #69480]	aerobic	no	97.783	yes
[Ref.: #69480]	halophile	no	91.889	no
[Ref.: #69480]	spore-forming	no	93.274	no
[Ref.: #69480]	thermophile	no	96.596	yes
[Ref.: #69480]	glucose-util	yes	89.997	no
[Ref.: #69480]	glucose-ferment	yes	66.656	no
[Ref.: #69480]	flagellated	no	97.082	no

Availability in culture collections External links

[Ref.: #8247]

Culture collection no.

DSM 19673, ATCC 43331, CCUG 25929, JCM 10003, NCTC 11853, VPB 160

[Ref.: #71238]

SI-ID 41777

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine.	Sakamoto M, Oshima K, Suda W, Kitamura K, Iida T, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.01242-13	2014	*
Phylogeny	hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes.	Sakamoto M, Suzuki N, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.021154-0	2010	*

References

#8247

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19673

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#48298 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 25929

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71238

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41777.1 )

* These data were automatically processed and therefore are not curated

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Bacteroides pyogenes JCM 10003

Bacteroides pyogenes JCM 10003

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