Acholeplasma equirhinis N93 is a facultative anaerobe bacterium that forms fried-egg-shaped colonies and was isolated from nasopharyngeal swab of a horse.
colony-forming facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Mycoplasmatota |
| Class Mollicutes |
| Order Acholeplasmatales |
| Family Acholeplasmataceae |
| Genus Acholeplasma |
| Species Acholeplasma equirhinis |
| Full scientific name Acholeplasma equirhinis Volokhov et al. 2020 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 66035 | SP4-Z MEDIUM (DSMZ Medium 1076b) | Medium recipe at MediaDive | Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Mammals | #Equidae (Horse) | |
| #Host Body-Site | #Organ | #Nose | |
| #Infection | #Patient | #Swab |
| @ref | Sample type | Country | Country ISO 3 Code | Continent | Enrichment culture | Enrichment culture composition | Enrichment culture duration | Enrichment culture temperature | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 66035 | nasopharyngeal swab of a horse | United Kingdom | GBR | Europe | 55.3618 | -3.4433 55.3618/-3.4433 | |||||
| 68267 | nasopharynx of a thoroughbred horse (Equus caballus) | United Kingdom | GBR | Europe | PPLO broth | containing glucose and penicillin (1.5-2 mg/mL) | 1-2 weeks | 36 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1705265v1 assembly for Acholeplasma equirhinis N93 | contig | 555393 | 76.66 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 66035 | Acholeplasma equirhinis strain N93 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence | EU925159 | 1546 | 555393 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 68267 | 36.83 | high performance liquid chromatography (HPLC) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.84 | no |
| 125439 | motility | BacteriaNetⓘ | no | 66.27 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 69.11 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.04 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 63.44 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 77.52 | yes |
| 125438 | aerobic | aerobicⓘ | no | 92.57 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 80.41 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.91 | no |
| 125438 | flagellated | motile2+ⓘ | no | 90.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Notification List of Bacterial Strains Made Available by the United Kingdom National Collection of Type Cultures in 2021. | Turnbull JD, Dicks J, Gurung S, McGregor H, NCTC 2021 Depositors Cohort, Alexander S. | Microbiol Resour Announc | 10.1128/mra.00357-22 | 2022 | ||
| Phylogeny | Acholeplasma equirhinis sp. nov. isolated from respiratory tract of horse (Equus caballus) and Mycoplasma procyoni sp. nov. isolated from oral cavity of raccoon (Procyon lotor). | Volokhov DV, Gao Y, Davidson MK, Chizhikov VE | Arch Microbiol | 10.1007/s00203-019-01786-x | 2019 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66035 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106692 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68267 | Dmitriy V. Volokhov, Yamei Gao, Maureen K. Davidson & Vladimir E. Chizhikov: Acholeplasma equirhinis sp. nov. isolated from respiratory tract of horse (Equus caballus) and Mycoplasma procyoni sp. nov. isolated from oral cavity of raccoon (Procyon lotor). Arch Microbiol 202: 411 - 420 2020 ( DOI 10.1007/s00203-019-01786-x ) |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive159212.20260601.11
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