Schaedlerella arabinosiphila (DSM 106076, KCTC 15657, TLL-A1)

Name: Schaedlerella arabinosiphila (DSM 106076, KCTC 15657, TLL-A1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159203

Type strain

Strain Designation TLL-A1

Culture col. no. DSM 106076 KCTC 15657 TLL-A1

NCBI tax ID(s) 2044587

Special Collections DSMZ KCTC Literature strains

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Schaedlerella arabinosiphila TLL-A1 is an anaerobe, chemoorganotroph, spore-forming prokaryote that was isolated from fecal Pellet from C57BL/6J mouse.

spore-forming rod-shaped anaerobe chemoorganotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407519

KCTC 15657,DSM 106076

@ref 20215

Last LPSN update 2025-12-16 10:08:12

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Schaedlerella

Species Schaedlerella arabinosiphila

Full scientific name Schaedlerella arabinosiphila Soh et al. 2019

Morphology

Cell morphology

@ref	Cell shape
67771	rod-shaped
67771
68228	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66026	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66026	positive	growth	37	mesophilic
67771	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
67771	anaerobe
68228	obligate anaerobe
125439	anaerobe

Nutrition type

68228

Typechemoorganotroph

Spore formation

@ref	Spore description	Spore formation
68228	spore staining was not conclusive as only a few cells seem to harbour potential spores

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68228	17057 ChEBI	cellobiose	+	growth
68228	62968 ChEBI	cellulose	-	growth
68228	16261 ChEBI	chitosan	-	growth
68228	15354 ChEBI	choline	-	growth
68228	17108 ChEBI	D-arabinose	+	growth
68228	15824 ChEBI	D-fructose	+	growth
68228	12936 ChEBI	D-galactose	+	growth
68228	17634 ChEBI	D-glucose	+	growth
68228	16899 ChEBI	D-mannitol	+	growth
68228	16988 ChEBI	D-ribose	+	growth
68228	65327 ChEBI	D-xylose	+	growth
68228	23652 ChEBI	dextrin	+	growth
68228	17113 ChEBI	erythritol	+	growth
68228	16000 ChEBI	ethanolamine	-	growth
68228	28087 ChEBI	glycogen	+	growth
68228	30849 ChEBI	L-arabinose	+	growth
68228	18287 ChEBI	L-fucose	+	growth
68228	17716 ChEBI	lactose	+	growth
68228	25140 ChEBI	maltodextrin	+	growth
68228	17306 ChEBI	maltose	+	growth
68228	28053 ChEBI	melibiose	+	growth
68228	506227 ChEBI	N-acetyl-D-glucosamine	+	growth
68228	35418 ChEBI	n-acetylneuraminate	+	growth
68228	15361 ChEBI	pyruvate	-	growth
68228	16634 ChEBI	raffinose	+	growth
68228	28017 ChEBI	starch	-	growth
68228	17992 ChEBI	sucrose	+	growth
68228	75211 ChEBI	tannic acid	+	growth

Enzymes

@ref	Value	Activity	Ec
68228	alanine arylamidase	-	3.4.11.2
68228	alkaline phosphatase	-	3.1.3.1
68228	arginine arylamidase	-
68228	glutamate decarboxylase	-	4.1.1.15
68228	glutamyl-glutamate arylamidase	-
68228	histidine arylamidase	-
68228	leucine arylamidase	-	3.4.11.1
68228	leucyl glycin arylamidase	-	3.4.11.1
68228	phenylalanine arylamidase	-
68228	proline-arylamidase	-	3.4.11.5
68228	pyroglutamic acid arylamidase	-
68228	serine arylamidase	-
68228	tyrosine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Caecal content
#Host	#Mammals	#Muridae (Mouse/Rat)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66026	fecal Pellet from C57BL/6J mouse	Singapore	SGP	Asia	1.2943	103.777 1.2943/103.777
67771	From fecal pellet from C57BL/6J mouse	Singapore	SGP	Asia
68228	faeces of C57BL/6J mice				1.29432	103.778 1.29432/103.778

Taxonmaps

69479

Global distribution of 16S sequence MG182358 (>99% sequence identity) for Schaedlerella arabinosiphila subclade from Microbeatlas

Aquatic Samples	68
Soil Samples	93
Animal Samples	12389
Plant Samples	67
Total Samples	12617

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67771	ASM388504v1 assembly for Schaedlerella arabinosiphila DSM 106076	contig	GCA_003885045	2484868.3	8111446749	2044587	73.58

Genome browser: GCA_003885045

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66026	Schaedlerella arabinosiphila strain TLL-A1 16S ribosomal RNA gene, partial sequence	MG182358	1430		2044587

GC content

@ref	GC-content (mol%)	Method
66026	47.9	sequence analysis
68228	47.9	genome sequence analysis
67771	47.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Schaedlerella arabinosiphila DSM 106076
NCBI: GCA_003885045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	84.60	no
125439	motility	BacteriaNetⓘ	yes	83.10	no
125439	gram_stain	BacteriaNetⓘ	positive	64.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridiaceae bacterium DSM 106076
PATRIC: 2484868.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.33	yes
125438	anaerobic	anaerobicⓘ	yes	86.19	no
125438	spore-forming	spore-formingⓘ	yes	55.89	no
125438	aerobic	aerobicⓘ	no	95.10	yes
125438	thermophilic	thermophileⓘ	no	89.24	no
125438	flagellated	motile2+ⓘ	yes	72.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Schaedlerella arabinosiphila gen. nov., sp. nov., a D-arabinose-utilizing bacterium isolated from faeces of C57BL/6J mice that is a close relative of Clostridium species ASF 502.	Soh M, Miyake S, Lim A, Ding Y, Seedorf H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003671	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66026	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106076
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68228	Melissa Soh, Sou Miyake, Austin Lim, Yichen Ding and Henning Seedorf: Schaedlerella arabinosiphila gen. nov., sp. nov., a D-arabinose-utilizing bacterium isolated from faeces of C57BL/6J mice that is a close relative of Clostridium species ASF 502. IJSEM 69: 3616 - 3622 2019 ( DOI 10.1099/ijsem.0.003671 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Schaedlerella arabinosiphila (DSM 106076, KCTC 15657, TLL-A1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003885045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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