Name: Streptomyces oryziradicis NEAU-C40
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159200

Type strain:

Species: Streptomyces oryziradicis

Strain Designation: NEAU-C40

Culture col. no.: DSM 107943, CCTCC AA 2018038

Strain history: <- J. Zhao, School of Life Science, Northeast Agricultural University; NEAU-C40 <- J. Zhao, School of Life Science, Northeast Agricultural University; NEAU-C40

NCBI tax ID(s): 2571141 (species)

SI-ID 399947

DSM 107943

Section

Streptomyces oryziradicis NEAU-C40 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces oryziradicis**
	Full Scientific Name (LPSN)	Streptomyces oryziradicis Li et al. 2020

Synonym

Actinacidiphila oryziradicis

Information on morphological and physiological properties Morphology

[Ref.: #69543]	Gram stain	positive

[Ref.: #69543]	Cell shape	rod-shaped

[Ref.: #69255]	Colony color	Light ivory (1015)
[Ref.: #69255]	Cultivation medium used	ISP 6

[Ref.: #69255]	Colony color	Light ivory (1015)
[Ref.: #69255]	Cultivation medium used	suter with tyrosine

[Ref.: #69255]	Colony color	Light ivory (1015)
[Ref.: #69255]	Cultivation medium used	suter without tyrosine

[Ref.: #69255]	Colony color	Olive green (6003), chrome green (6020), mouse grey (7005)
[Ref.: #69255]	Cultivation medium used	ISP 3

[Ref.: #69255]	Colony color	Oyster white (1013)
[Ref.: #69255]	Cultivation medium used	ISP 4

[Ref.: #69255]	Colony color	Oyster white (1013), light ivory (1015)
[Ref.: #69255]	Cultivation medium used	ISP 5

[Ref.: #69255]	Colony color	Sand yellow (1002)
[Ref.: #69255]	Cultivation medium used	ISP 7

[Ref.: #69255]	Colony color	Terra brown (8028), olive grey (7002)
[Ref.: #69255]	Cultivation medium used	ISP 2

[Ref.: #69255]	Pigment production	no
[Ref.: #69255]	Pigment name	Melanin
[Ref.: #69255]	Pigment production	no
[Ref.: #69255]	Pigment name	soluble pigment

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	ISP 2

[Ref.: #69255]	Multicellular complex forming ability	yes
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Multicellular complex color	Signal white (9003)
[Ref.: #69255]	Medium Name (multicellularity)	ISP 3

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	ISP 4

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	ISP 5

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	ISP 6

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	ISP 7

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69255]	Multicellular complex forming ability	no
[Ref.: #69255]	Multicellular complex name	Aerial mycelium
[Ref.: #69255]	Medium Name (multicellularity)	suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66023]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #66023]

Culture medium growth

[Ref.: #66023]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66023]

Culture medium composition

expand / minimize

[Ref.: #66023]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #66023]

Culture medium growth

[Ref.: #66023]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66023]

Culture medium composition

expand / minimize

[Ref.: #69543]

Culture medium

ISP 3 and BA

[Ref.: #69543]

Culture medium growth

[Ref.: #69543]

Culture medium

ISP 2, ISP 4 and ISP 7

[Ref.: #69543]

Culture medium growth

[Ref.: #69543]

Culture medium

poor growth on ISP 1, ISP 6 and CA

[Ref.: #69543]

Culture medium growth

		Temperature
[Ref.: #66023]	growth	28 °C
[Ref.: #69543]	growth	15-32 °C
[Ref.: #69543]	optimum	28 °C

[Ref.: #66023]	Temperature range	mesophilic
[Ref.: #69543]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69543]			optimum	7
[Ref.: #69543]			growth	4-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69543]

Oxygen tolerance

aerobe

[Ref.: #69543]	Spore description	The aerial mycelia that differentiate into spiral spore chains consisting of rod-shaped spores with smooth surfaces, and the colour of aerial mycelium is greyish brown to pale, and substrate mycelium is greyish brown on ISP 3 medium.
[Ref.: #69543]	Type of spore	spore
[Ref.: #69543]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69255]		NaCl		growth	0-10	%
[Ref.: #69543]		NaCl		growth	0-2	%(w/v)

[Ref.: #69543]	Observation	The whole-cell sugars are glucose, rhamnose and ribose.
[Ref.: #69543]	Observation	The polar lipid profile comprises diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol mannoside and an unidentified lipid.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69255]	arabinose ChEBI	+	growth
[Ref.: #69543]	aspartate ChEBI	-	nitrogen source
[Ref.: #69255]	cellulose ChEBI	+	growth
[Ref.: #69543]	cellulose ChEBI	-	assimilation
[Ref.: #69543]	creatine ChEBI	+	nitrogen source
[Ref.: #69543]	D-fructose ChEBI	+	carbon source
[Ref.: #69543]	D-galactose ChEBI	+	carbon source
[Ref.: #69543]	D-glucose ChEBI	-	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	D-mannitol ChEBI	+	carbon source
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	D-mannose ChEBI	-	carbon source
[Ref.: #69543]	D-ribose ChEBI	-	carbon source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	D-sorbitol ChEBI	-	carbon source
[Ref.: #69543]	D-xylose ChEBI	+	carbon source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69255]	fructose ChEBI	+	growth
[Ref.: #69543]	gelatin ChEBI	-	assimilation
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69255]	glucose ChEBI	+	growth
[Ref.: #69543]	glycine ChEBI	-	nitrogen source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	hydrogen sulfide ChEBI	-	assimilation
[Ref.: #69255]	inositol ChEBI	+	growth
[Ref.: #69543]	L-alanine 4-nitroanilide	+	nitrogen source
[Ref.: #69543]	L-arabinose ChEBI	-	carbon source
[Ref.: #69543]	L-arginine ChEBI	+	nitrogen source
[Ref.: #69543]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #69543]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #69543]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #69543]	L-proline ChEBI	+	nitrogen source
[Ref.: #69543]	L-rhamnose ChEBI	+	carbon source
[Ref.: #69543]	L-serine ChEBI	+	nitrogen source
[Ref.: #69543]	L-threonine ChEBI	+	nitrogen source
[Ref.: #69543]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #69543]	lactose ChEBI	-	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	maltose ChEBI	-	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69255]	mannose ChEBI	+	growth
[Ref.: #69543]	milk	-	assimilation
[Ref.: #69543]	myo-inositol ChEBI	-	carbon source
[Ref.: #69543]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69255]	raffinose ChEBI	+	growth
[Ref.: #69543]	raffinose ChEBI	+	carbon source
[Ref.: #69255]	rhamnose ChEBI	+	growth
[Ref.: #69543]	starch ChEBI	-	hydrolysis
[Ref.: #69255]	sucrose ChEBI	+	growth
[Ref.: #69543]	sucrose ChEBI	-	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69543]	tween 20 ChEBI	-	hydrolysis
[Ref.: #69543]	tween 40 ChEBI	-	hydrolysis
[Ref.: #69543]	tween 80 ChEBI	-	hydrolysis
[Ref.: #69543]	urea ChEBI	-	hydrolysis
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69255]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69543]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69543]

Fatty acid	Percentage
C16:0 iso	33.77
C15:0 anteiso	15.38
C16:0	13.76
C17:0 anteiso	11.88
C18:1 w7c	8.6
C17:0 cyclo	6.55
C14:0 iso	5.62
C18:0	3.9
C14:0	0.52

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69255]	3749	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69255]	5933	not determinedn.d.	-	+	+/-	-	+	-	-	-	-	+	+	-	+	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66023]	Sample type/isolated from	soil
[Ref.: #66023]	Geographic location (country and/or sea, region)	Harbin, Northeast Agricultural University (45° 44' 26.2'' N, 126° 43' 14.9'' E)
[Ref.: #66023]	Country	China
[Ref.: #66023]	Country ISO 3 Code	CHN
[Ref.: #66023]	Continent	Asia
[Ref.: #66023]	Geographic location	45.7406°/126.7210°

[Ref.: #69543]	Sample type/isolated from	the rhizosphere soil of rice collected in Harbin.
[Ref.: #69543]	Geographic location (country and/or sea, region)	Harbin
[Ref.: #69543]	Country	China
[Ref.: #69543]	Country ISO 3 Code	CHN
[Ref.: #69543]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66023]	Streptomyces sp. strain NEAU-C40 16S ribosomal RNA gene, partial sequence	MK245982	1517	ENA	1931 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69543]	Actinacidiphila oryziradicis NEAU-C40	GCA_005047355	scaffold	GenBank	2571141 tax ID
[Ref.: #69543]	genome sequence	SUMC00000000		GenBank	2571141 tax ID

[Ref.: #66023]	GC-content	71.8 mol%	sequence analysis
[Ref.: #69543]	GC-content	71.8 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #66023]

Culture collection no.

DSM 107943, CCTCC AA 2018038

[Ref.: #111700]

SI-ID 399947

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces oryziradicis sp. nov., a novel actinomycete isolated from rhizosphere soil of rice (Oryza sativa L.).	Li C, Cao P, Jiang M, Sun T, Shen Y, Xiang W, Zhao J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003777	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66023

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107943

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69255

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69543

Chenxu Li, Peng Cao, Mengqi Jiang, Tianyu Sun, Yue Shen, Wensheng Xiang, Junwei Zhao, Xiangjing Wang: Streptomyces oryziradicis sp. nov., a novel actinomycete isolated from rhizosphere soil of rice (Oryza sativa L.). IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003777 )

#111700

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399947.1 )

* These data were automatically processed and therefore are not curated

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