Bacteroides ovatus (DSM 1896, ATCC 8483, NCTC 11153)

Name: Bacteroides ovatus (DSM 1896, ATCC 8483, NCTC 11153)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1592

Type strain

Strain Designation LRA 044 07 88

Culture col. no. DSM 1896 ATCC 8483 NCTC 11153 CCUG 4943 CIP 103756 4 more

NCBI tax ID(s) 411476 28116

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- ATCC; ATCC 8483 <- A. H. Eggerth; JCM <-- ATCC 8483 <-- A. H. Eggerth. CIP <- 1993, R. Mercier, bioMérieux, La Balme-les-Grottes, France: strain LRA 044 07 88 <- 1985, Analytab, Plainview, USA

Links

Bacteroides ovatus LRA 044 07 88 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from Human feces.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92789

ATCC 8483,NCTC 11153,CCUG 4943,CIP 103756,DSM 1896,JCM 5824,CCRC 10623,BCRC 10623,KCTC 5011,VTT E-062944,LMG 28902

@ref 20215

Last LPSN update 2026-05-29 08:25:17

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides ovatus

Full scientific name Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980)

Synonyms (2)

Bacteroides koreensis
Bacteroides kribbi

BacDive ID	Other strains from **Bacteroides ovatus** (8)	Type strain
134688	B. ovatus 3301643, CIP 108296
147982	B. ovatus CCUG 34617
148304	B. ovatus CCUG 35192
149910	B. ovatus CCUG 38663
150159	B. ovatus CCUG 39139
150259	B. ovatus CCUG 39406, DSM 11773
150260	B. ovatus CCUG 39407, DSM 11776
156073	B. ovatus CCUG 60273, ATCC BAA-1296, LBM 90.01.069

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121472	negative	rod-shaped
125439	negative			95.444

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
918	gamma	0	1-2 days
121472		0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
918	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
918	CHOPPED MEAT MEDIUM (DSMZ Medium 78)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
32784	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
918	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)	Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
121472	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
918	positive	growth	37
32784	positive	growth	37
44813	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
918	anaerobe
44813	anaerobe
44813	obligate anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.669

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
121472	4853 ChEBI	esculin	+	hydrolysis
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
121472	17632 ChEBI	nitrate	-	reduction
121472	17632 ChEBI	nitrate	+	respiration
121472	16301 ChEBI	nitrite	-	reduction
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121472	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121472	amylase	+
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	+	3.2.1.23	from API zym
121472	beta-galactosidase	+	3.2.1.23
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121472	caseinase	+	3.4.21.50
121472	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121472	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
121472	gelatinase	-
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
121472	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
121472	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121472	oxidase	-
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
121472	protease	-
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
121472	tween esterase	-
68380	tyrosine arylamidase	-		from API rID32A
121472	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

44813

Fatty acid	Percentage	ECL
C15:0 ANTEISO	39.5	14.711
C17:0 iso 3OH	10.7	18.161
C15:0	9.7	15
C15:0 ISO	9.3	14.621
C16:0 3OH	6.3	17.52
C16:0	4.4	16
C15:0 3OH	3.7	16.504
C17:0 2OH	2.9	18.249
unknown 13.566	2.3	13.566
C14:0 ISO	2.3	13.618
C14:0	2.2	14
C17:0 3OH	1.5	18.535
C18:2 ω6,9c/C18:0 ANTE	1.4	17.724
C16:0 iso 3OH	0.9	17.145
C13:0 ANTEISO	0.8	12.701
C13:0 iso	0.8	12.612
C15:0 ISO 3OH	0.5	16.135
C15:0 2OH	0.5	16.217
C16:0 iso	0.3	15.626

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121472	-	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
918	-	-	+	+	-	+	+	+	-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-
918	-	-	+	+	-	+	+	+	+/-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+/-	+	-	-	+	-	-	-	-	+	-	-	+/-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121472	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Human feces	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AB510705 (>99% sequence identity) for Bacteroides ovatus from Microbeatlas

Aquatic Samples	1522
Soil Samples	195
Animal Samples	77814
Plant Samples	66
Total Samples	79597

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
918	2	Risk group (German classification) According to TRBA 466
121472	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM131499v1 assembly for Bacteroides ovatus ATCC 8483	complete	GCA_001314995	28116.7	2684623200	28116	98.7
66792	ASM2514677v1 assembly for Bacteroides ovatus ATCC 8483	complete	GCA_025146775	28116.1884	8119504562	28116	98.64
124043	ASM2014974v1 assembly for Bacteroides ovatus FDAARGOS_1516	chromosome	GCA_020149745	28116.1773		28116	88.26
67770	50450_E01 assembly for Bacteroides ovatus NCTC11153	contig	GCA_900445505	28116.197	8017829034	28116	73.81
67770	ASM295963v1 assembly for Bacteroides ovatus ATCC 8483	contig	GCA_002959635	28116.125	8020396120	28116	71.94
66792	ASM15412v1 assembly for Bacteroides ovatus ATCC 8483	scaffold	GCA_000154125	411476.11	641380449	411476	67.79
67770	IMG-taxon 2693429857 annotated assembly for Bacteroides ovatus DSM 1896	scaffold	GCA_900107475	28116.16	2693429857	28116	66.6

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bacteroides ovatus 16S-23S rDNA intergenic spacer region	AF176691	551	28116
20218	Bacteroides ovatus ATCC:8483 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	FJ410383	3455	28116
20218	Bacteroides ovatus NCTC 11153 16S ribosomal RNA gene, complete sequence	L16484	1468	28116
20218	B.ovatus 16S rRNA (ATCC 8483T)	X83952	1395	28116
918	Bacteroides ovatus strain JCM5824 16S ribosomal RNA gene, partial sequence	EU136682	1435	28116
67770	Bacteroides ovatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5824	AB510705	1459	28116
124043	Bacteroides ovatus 16S ribosomal RNA gene, partial sequence.	AY652736	1451	28116
124043	Bacteroides ovatus partial 16S rRNA gene, strain ATCC-8483	LR999660	1037	28116

GC content

@ref	GC-content (mol%)	Method
918	40.0	thermal denaturation, midpoint method (Tm)
918	41.9	sequence analysis
67770	40	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM131499v1 assembly for Bacteroides ovatus ATCC 8483
BV-BRC: 28116.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	81.39	no
125439	gram_stain	BacteriaNetⓘ	negative	95.44	no
125439	motility	BacteriaNetⓘ	no	76.51	no
125439	spore_formation	BacteriaNetⓘ	no	96.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Proteome	Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.	Ronne ME, Tandrup T, Madsen M, Hunt CJ, Myers PN, Moll JM, Holck J, Brix S, Strube ML, Aachmann FL, Wilkens C, Svensson B.	Appl Environ Microbiol	10.1128/aem.01185-23	2023
	Microbially-produced folate forms support the growth of Roseburia intestinalis but not its competitive fitness in fecal batch fermentations.	Kundra P, Geirnaert A, Pugin B, Pluss S, Kariluoto S, Lacroix C, Greppi A.	BMC Microbiol	10.1186/s12866-024-03528-6	2024
	Deciphering oxidative stress responses in human gut microbes and fecal microbiota: a cultivation-based approach.	Zund JN, Caflisch M, Mujezinovic D, Pluss S, Lacroix C, Pugin B.	FEMS Microbiol Ecol	10.1093/femsec/fiaf054	2025
	Diet-driven differential response of Akkermansia muciniphila modulates pathogen susceptibility.	Wolter M, Grant ET, Boudaud M, Pudlo NA, Pereira GV, Eaton KA, Martens EC, Desai MS.	Mol Syst Biol	10.1038/s44320-024-00036-7	2024
	Cross-feeding of bifidobacteria promotes intestinal homeostasis: a lifelong perspective on the host health.	Xiao M, Zhang C, Duan H, Narbad A, Zhao J, Chen W, Zhai Q, Yu L, Tian F.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00524-6	2024
	GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance.	Otaru N, Ye K, Mujezinovic D, Berchtold L, Constancias F, Cornejo FA, Krzystek A, de Wouters T, Braegger C, Lacroix C, Pugin B.	Front Microbiol	10.3389/fmicb.2021.656895	2021
Pathogenicity	Constructing a gnotobiotic mouse model with a synthetic human gut microbiome to study host-microbe cross talk.	Steimle A, De Sciscio A, Neumann M, Grant ET, Pereira GV, Ohno H, Martens EC, Desai MS.	STAR Protoc	10.1016/j.xpro.2021.100607	2021
	Maternal diet and gut microbiome composition modulate early-life immune development.	Grant ET, Boudaud M, Muller A, Muller A, Macpherson AJ, Desai MS.	EMBO Mol Med	10.15252/emmm.202217241	2023
	Mucolytic bacteria license pathobionts to acquire host-derived nutrients during dietary nutrient restriction.	Sugihara K, Kitamoto S, Saraithong P, Nagao-Kitamoto H, Hoostal M, McCarthy C, Rosevelt A, Muraleedharan CK, Gillilland MG, Imai J, Omi M, Bishu S, Kao JY, Alteri CJ, Barnich N, Schmidt TM, Nusrat A, Inohara N, Golob JL, Kamada N.	Cell Rep	10.1016/j.celrep.2022.111093	2022
	Opposing diet, microbiome, and metabolite mechanisms regulate inflammatory bowel disease in a genetically susceptible host.	Pereira GV, Boudaud M, Wolter M, Alexander C, De Sciscio A, Grant ET, Trindade BC, Pudlo NA, Singh S, Campbell A, Shan M, Zhang L, Yang Q, Willieme S, Kim K, Denike-Duval T, Fuentes J, Bleich A, Schmidt TM, Kennedy L, Lyssiotis CA, Chen GY, Eaton KA, Desai MS, Martens EC.	Cell Host Microbe	10.1016/j.chom.2024.03.001	2024
Metabolism	SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations.	Bustion AE, Nayak RR, Agrawal A, Turnbaugh PJ, Pollard KS.	Elife	10.7554/elife.82401	2023
	Evaluation of Different Advanced Approaches to Simulation of Dynamic In Vitro Digestion of Polyphenols from Different Food Matrices-A Systematic Review.	Duque-Soto C, Quintriqueo-Cid A, Rueda-Robles A, Robert P, Borras-Linares I, Lozano-Sanchez J.	Antioxidants (Basel)	10.3390/antiox12010101	2022
Metabolism	Microbial short-chain fatty acids modulate CD8⁺ T cell responses and improve adoptive immunotherapy for cancer.	Luu M, Riester Z, Baldrich A, Reichardt N, Yuille S, Busetti A, Klein M, Wempe A, Leister H, Raifer H, Picard F, Muhammad K, Ohl K, Romero R, Fischer F, Bauer CA, Huber M, Gress TM, Lauth M, Danhof S, Bopp T, Nerreter T, Mulder IE, Steinhoff U, Hudecek M, Visekruna A.	Nat Commun	10.1038/s41467-021-24331-1	2021
	Preliminary safety evaluation of a new Bacteroides xylanisolvens isolate.	Ulsemer P, Toutounian K, Schmidt J, Karsten U, Goletz S.	Appl Environ Microbiol	10.1128/aem.06641-11	2012
Metabolism	Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals.	Theilmann MC, Goh YJ, Nielsen KF, Klaenhammer TR, Barrangou R, Abou Hachem M.	mBio	10.1128/mbio.01421-17	2017
Pathogenicity	The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut.	Elzinga J, van der Oost J, de Vos WM, Smidt H.	Microbiol Mol Biol Rev	10.1128/mmbr.00054-18	2019
Metabolism	Diastereomer-specific quantification of bioactive hexosylceramides from bacteria and mammals.	von Gerichten J, Schlosser K, Lamprecht D, Morace I, Eckhardt M, Wachten D, Jennemann R, Grone HJ, Mack M, Sandhoff R.	J Lipid Res	10.1194/jlr.d076190	2017
Metabolism	Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation.	Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ.	Cell Host Microbe	10.1016/j.chom.2020.12.008	2021
	A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility.	Desai MS, Seekatz AM, Koropatkin NM, Kamada N, Hickey CA, Wolter M, Pudlo NA, Kitamoto S, Terrapon N, Muller A, Young VB, Henrissat B, Wilmes P, Stappenbeck TS, Nunez G, Martens EC.	Cell	10.1016/j.cell.2016.10.043	2016
Enzymology	Bacteriophages active against Bacteroides fragilis in sewage-polluted waters.	Tartera C, Jofre J.	Appl Environ Microbiol	10.1128/aem.53.7.1632-1637.1987	1987
Pathogenicity	Bacteroides ovatus alleviates dysbiotic microbiota-induced graft-versus-host disease.	Hayase E, Hayase T, Mukherjee A, Stinson SC, Jamal MA, Ortega MR, Sanchez CA, Ahmed SS, Karmouch JL, Chang CC, Flores II, McDaniel LK, Brown AN, El-Himri RK, Chapa VA, Tan L, Tran BQ, Xiao Y, Fan C, Pham D, Halsey TM, Jin Y, Tsai WB, Prasad R, Glover IK, Enkhbayar A, Mohammed A, Schmiester M, King KY, Britton RA, Reddy P, Wong MC, Ajami NJ, Wargo JA, Shelburne S, Okhuysen PC, Liu C, Fowler SW, Conner ME, Katsamakis Z, Smith N, Burgos da Silva M, Ponce DM, Peled JU, van den Brink MRM, Peterson CB, Rondon G, Molldrem JJ, Champlin RE, Shpall EJ, Lorenzi PL, Mehta RS, Martens EC, Alousi AM, Jenq RR.	Cell Host Microbe	10.1016/j.chom.2024.08.004	2024
	ez-CAZy a reference annotation database for linking glycoside hydrolase sequence to enzymatic activity.	Erdody DS, Griffin NG, Berlemont R.	Sci Rep	10.1038/s41598-025-08859-6	2025
	Carbohydrate Deacetylase Unique to Gut Microbe Bacteroides Reveals Atypical Structure.	Schwartz LA, Norman JO, Hasan S, Adamek OE, Dzuong E, Lowenstein JC, Yost OG, Sankaran B, McLaughlin KJ.	Biochemistry	10.1021/acs.biochem.4c00519	2025
	When simplicity triumphs: niche specialization of gut bacteria exists even for simple fiber structures.	Xu H, Pudlo NA, Cantu-Jungles TM, Tuncil YE, Nie X, Kaur A, Reuhs BL, Martens EC, Hamaker BR.	ISME Commun	10.1093/ismeco/ycae037	2024
	Genomes of Bacteroides ovatus, B. cellulosilyticus, B. uniformis, Phocaeicola vulgatus, and P. dorei isolated from gut cavernous fistulous tract micropathologies in Crohn's disease.	Singh V, West G, Fiocchi C, Cominelli F, Good CE, Jacobs MR, Rodriguez-Palacios A.	Microbiol Resour Announc	10.1128/mra.01152-23	2024
Metabolism	Carbon-Source Effects on Growth and Secondary Metabolism in the Marine Bacteroidota Tenacibaculum mesophilum and Fulvivirga kasyanovii.	Linares-Otoya L, Linares-Otoya V, Galliani-Huamanchumo G, Carrion-Zavaleta T, Condor-Goytizolo J, Schaberle TF, Ganoza-Yupanqui ML, Campos-Florian J.	Mar Drugs	10.3390/md23100394	2025
	Artificial cellulose derivatives are metabolized by select human gut Bacteroidota upon priming with common plant beta-glucans.	Panwar D, Stewart WA, Rodd A, Brumer H.	J Bacteriol	10.1128/jb.00198-25	2025
Metabolism	Bacteroides ovatus Promotes IL-22 Production and Reduces Trinitrobenzene Sulfonic Acid-Driven Colonic Inflammation.	Ihekweazu FD, Engevik MA, Ruan W, Shi Z, Fultz R, Engevik KA, Chang-Graham AL, Freeborn J, Park ES, Venable S, Horvath TD, Haidacher SJ, Haag AM, Goodwin A, Schady DA, Hyser JM, Spinler JK, Liu Y, Versalovic J.	Am J Pathol	10.1016/j.ajpath.2021.01.009	2021
	MetaPep: A core peptide database for faster human gut metaproteomics database searches.	Sun Z, Ning Z, Cheng K, Duan H, Wu Q, Mayne J, Figeys D.	Comput Struct Biotechnol J	10.1016/j.csbj.2023.08.025	2023
	Bacteroides ovatus colonization influences the abundance of intestinal short chain fatty acids and neurotransmitters.	Horvath TD, Ihekweazu FD, Haidacher SJ, Ruan W, Engevik KA, Fultz R, Hoch KM, Luna RA, Oezguen N, Spinler JK, Haag AM, Versalovic J, Engevik MA.	iScience	10.1016/j.isci.2022.104158	2022
	Acarbose impairs gut Bacteroides growth by targeting intracellular glucosidases.	Brown HA, Morris AL, Pudlo NA, Hopkins AE, Martens EC, Golob JL, Koropatkin NM.	mBio	10.1128/mbio.01506-24	2024
	Production of deoxycholic acid by low-abundant microbial species is associated with impaired glucose metabolism.	Wahlstrom A, Brumbaugh A, Sjoland W, Olsson L, Wu H, Henricsson M, Lundqvist A, Makki K, Hazen SL, Bergstrom G, Marschall HU, Fischbach MA, Backhed F.	Nat Commun	10.1038/s41467-024-48543-3	2024
	Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice.	Gellman RH, Olm MR, Terrapon N, Enam F, Higginbottom SK, Sonnenburg JL, Sonnenburg ED.	Cell Rep	10.1016/j.celrep.2023.113233	2023
	The molecular basis of cereal mixed-linkage beta-glucan utilization by the human gut bacterium Segatella copri.	Golisch B, Cordeiro RL, Fraser ASC, Briggs J, Stewart WA, Van Petegem F, Brumer H.	J Biol Chem	10.1016/j.jbc.2024.107625	2024
	RELMbeta sets the threshold for microbiome-dependent oral tolerance.	Stephen-Victor E, Kuziel GA, Martinez-Blanco M, Jugder BE, Benamar M, Wang Z, Chen Q, Lozano GL, Abdel-Gadir A, Cui Y, Fong J, Saint-Denis E, Chang I, Nadeau KC, Phipatanakul W, Zhang A, Farraj FA, Holder-Niles F, Zeve D, Breault DT, Schmitz-Abe K, Rachid R, Crestani E, Rakoff-Nahoum S, Chatila TA.	Nature	10.1038/s41586-024-08440-7	2025
	Protection against fibrosis by a bacterial consortium in metabolic dysfunction-associated steatohepatitis and the role of amino acid metabolism.	Kwan SY, Gonzales KA, Jamal MA, Stevenson HL, Tan L, Lorenzi PL, Futreal PA, Hawk ET, McCormick JB, Fisher-Hoch SP, Jenq RR, Beretta L.	Gut Microbes	10.1080/19490976.2024.2399260	2024
	The claim of primacy of human gut Bacteroides ovatus in dietary cellobiose degradation.	Li M, Wang Y, Guo C, Wang S, Zheng L, Bu Y, Ding K.	Gut Microbes	10.1080/19490976.2023.2227434	2023
	The biosynthesis, degradation, and function of cell wall beta-xylosylated xyloglucan mirrors that of arabinoxyloglucan.	Wilson LFL, Neun S, Yu L, Tryfona T, Stott K, Hollfelder F, Dupree P.	New Phytol	10.1111/nph.19305	2023
Enzymology	In situ identifying sennoside A-reducing bacteria guilds in human gut microbiota via enzymatic activity visualization.	Zhai C, Liu X, Liu Z, Ma H, Li H, Gong Y, Li X, Wang Y, Zhang N, Zhang H, Luo G, Wang Y, Gao X.	Gut Microbes	10.1080/19490976.2025.2560598	2025
	Microbiota shape the colon epithelium controlling inter-crypt absorptive goblet cells via butyrate-GP R109A signalling.	Dias Nirello V, Araujo N, Carvalho de Assis H, Moreno-Gonzalez M, Ruiz P, Castro PR, Shealy NG, Shelton C, Font Fernandes M, de Oliveira S, Boroni M, Ryffel B, Byndloss MX, Beraza N, Ramirez Vinolo MA, Varga-Weisz P.	Gut Microbes	10.1080/19490976.2025.2573045	2025
	Gut metagenomic characteristics of ADHD reveal low Bacteroides ovatus-associated host cognitive impairment.	Li Y, Sun H, Huang Y, Yin A, Zhang L, Han J, Lyu Y, Xu X, Zhai Y, Sun H, Wang P, Zhao J, Sun S, Dong H, Zhu F, Wang Q, Augusto Rohde L, Xie X, Sun X, Xiong L.	Gut Microbes	10.1080/19490976.2022.2125747	2022
Genetics	Microbial characterization based on multifractal analysis of metagenomes.	Xie XH, Huang YJ, Han GS, Yu ZG, Ma YL.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1117421	2023
	A Small-Molecule Inhibitor of Gut Bacterial Urease Protects the Host from Liver Injury.	Richards-Corke KC, Jiang Y, Yeliseyev V, Zhang Y, Franzosa EA, Wang ZA, Yapa Abeywardana M, Cole PA, Huttenhower C, Bry L, Balskus EP.	ACS Chem Biol	10.1021/acschembio.3c00556	2025
Pathogenicity	The current landscape of fecal microbiota transplantation in treating inflammatory bowel disease.	Bi Y, Cheng B, Zou B, Liu S, Cui Z.	Transl Gastroenterol Hepatol	10.21037/tgh-24-138	2025
Enzymology	Transcriptional delineation of polysaccharide utilization loci in the human gut commensal Segatella copri DSM18205 and co-culture with exemplar Bacteroides species on dietary plant glycans.	Panwar D, Briggs J, Fraser ASC, Stewart WA, Brumer H.	Appl Environ Microbiol	10.1128/aem.01759-24	2025
	Tracking and characterization of a novel conjugative transposon identified by shotgun transposon mutagenesis.	Ortanez J, Degnan PH.	Front Microbiol	10.3389/fmicb.2024.1241582	2024
Metabolism	Utilization of dietary mixed-linkage beta-glucans by the Firmicute Blautia producta.	Singh RP, Niharika J, Thakur R, Wagstaff BA, Kumar G, Kurata R, Patel D, Levy CW, Miyazaki T, Field RA.	J Biol Chem	10.1016/j.jbc.2023.104806	2023
Metabolism	Unraveling the Metabolic Requirements of the Gut Commensal Bacteroides ovatus.	Fultz R, Ticer T, Ihekweazu FD, Horvath TD, Haidacher SJ, Hoch KM, Bajaj M, Spinler JK, Haag AM, Buffington SA, Engevik MA.	Front Microbiol	10.3389/fmicb.2021.745469	2021
	BoGH13A_Sus from Bacteroides ovatus represents a novel alpha-amylase used for Bacteroides starch breakdown in the human gut.	Brown HA, DeVeaux AL, Juliano BR, Photenhauer AL, Boulinguiez M, Bornschein RE, Wawrzak Z, Ruotolo BT, Terrapon N, Koropatkin NM.	Cell Mol Life Sci	10.1007/s00018-023-04812-w	2023
Metabolism	Prebiotic effects of yeast mannan, which selectively promotes Bacteroides thetaiotaomicron and Bacteroides ovatus in a human colonic microbiota model.	Oba S, Sunagawa T, Tanihiro R, Awashima K, Sugiyama H, Odani T, Nakamura Y, Kondo A, Sasaki D, Sasaki K.	Sci Rep	10.1038/s41598-020-74379-0	2020
Transcriptome	The Utilization by Bacteroides spp. of a Purified Polysaccharide from Fuzhuan Brick Tea.	Shi J, Zhou W, Chen G, Yi W, Sun Y, Zeng X.	Foods	10.3390/foods13111666	2024
	Bacteroides ovatus-mediated CD27^- MAIT cell activation is associated with obesity-related T2D progression.	Li Y, Yang Y, Wang J, Cai P, Li M, Tang X, Tan Y, Wang Y, Zhang F, Wen X, Liang Q, Nie Y, Chen T, Peng X, He X, Zhu Y, Shi G, Cheung WW, Wei L, Chen Y, Lu Y.	Cell Mol Immunol	10.1038/s41423-022-00871-4	2022
Metabolism	Mapping Molecular Recognition of beta1,3-1,4-Glucans by a Surface Glycan-Binding Protein from the Human Gut Symbiont Bacteroides ovatus.	Correia VG, Trovao F, Pinheiro BA, Bras JLA, Silva LM, Nunes C, Coimbra MA, Liu Y, Feizi T, Fontes CMGA, Mulloy B, Chai W, Carvalho AL, Palma AS.	Microbiol Spectr	10.1128/spectrum.01826-21	2021
	Microalgae-based bacteria for oral treatment of ASD through enhanced intestinal colonization and homeostasis.	Yang R, Ma L, Peng H, Zhai Y, Zhou G, Zhang L, Zhuo L, Wu W, Guo Y, Han J, Jing L, Zhou X, Ma X, Li Y.	Theranostics	10.7150/thno.103737	2025
	Determinants of raffinose family oligosaccharide use in Bacteroides species.	Basu A, Adams AND, Degnan PH, Vanderpool CK.	J Bacteriol	10.1128/jb.00235-24	2024
Metabolism	Structure-dependent stimulation of gut bacteria by arabinoxylo-oligosaccharides (AXOS): a review.	Leschonski KP, Mortensen MS, Hansen LBS, Krogh KBRM, Kabel MA, Laursen MF.	Gut Microbes	10.1080/19490976.2024.2430419	2024
	Effects of genetically modified soybean on physiological variables and gut microbiota of Sprague-Dawley rats.	Ashrafi-Dehkordi E, Alborzi A, Pouladfar G, Abbasian SA, Mazloomi SM.	PLoS One	10.1371/journal.pone.0311443	2024
	Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo.	Wesener DA, Beller ZW, Peters SL, Rajabi A, Dimartino G, Giannone RJ, Hettich RL, Gordon JI.	Elife	10.7554/elife.64478	2021
Metabolism	HIF-1 attenuates high-fiber diet-mediated proliferation and stemness of colonic epithelium.	Ribeiro Castro P, Correa RO, Servulo Cruz Angelim MK, de Rezende Rodovalho V, Font Fernandes M, Dias Nirello V, Dos Santos Pereira Gomes AB, de Souza Felipe J, Passarielo Pral L, de Oliveira S, Rodrigues PB, Fachi JL, Reis-de-Oliveira G, Smith BJ, Carregari VC, Shealy NG, Shelton C, Martins-de-Souza D, Moraes-Vieira PM, Xavier Byndloss M, Varga-Weisz P, Ramirez Vinolo MA.	Gut Microbes	10.1080/19490976.2025.2543123	2025
Enzymology	Cell Surface Xyloglucan Recognition and Hydrolysis by the Human Gut Commensal Bacteroides uniformis.	Grondin JM, Dejean G, Van Petegem F, Brumer H.	Appl Environ Microbiol	10.1128/aem.01566-21	2022
Pathogenicity	Quantifying the varying harvest of fermentation products from the human gut microbiota.	Arnoldini M, Sharma R, Moresi C, Chure G, Chabbey J, Slack E, Cremer J.	Cell	10.1016/j.cell.2025.07.005	2025
Metabolism	Mobilization of vitamin B₁₂ transporters alters competitive dynamics in a human gut microbe.	Frye KA, Piamthai V, Hsiao A, Degnan PH.	Cell Rep	10.1016/j.celrep.2021.110164	2021
	LolA and LolB are conserved in Bacteroidota and are crucial for gliding motility and Type IX secretion.	De Smet T, Baland E, Giovannercole F, Mignon J, Lizen L, Dugauquier R, Lauber F, Dieu M, Lima-Mendez G, Michaux C, Devos D, Renzi F.	Commun Biol	10.1038/s42003-025-07817-2	2025
Pathogenicity	A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.	Buzun E, Hsu CY, Sejane K, Oles RE, Vasquez Ayala A, Loomis LR, Zhao J, Rossitto LA, McGrosso DM, Gonzalez DJ, Bode L, Chu H.	Cell Host Microbe	10.1016/j.chom.2023.12.014	2024
	Serotonergic and immunomodulatory properties of the psychobiotic candidate Bacteroides finegoldii UO.H1052 and its extracellular vesicles.	Yousuf B, Esmail GA, Nazemof N, Bouhlel NE, Minic Z, Hammami R.	Appl Environ Microbiol	10.1128/aem.00891-25	2025
	Structural and Biochemical Characterization of a Nonbinding SusD-Like Protein Involved in Xylooligosaccharide Utilization by an Uncultured Human Gut Bacteroides Strain.	Tauzin AS, Wang Z, Cioci G, Li X, Labourel A, Machado B, Lippens G, Potocki-Veronese G.	mSphere	10.1128/msphere.00244-22	2022
	Genomic Background and Phylogeny of cfiA-Positive Bacteroides fragilis Strains Resistant to Meropenem-EDTA.	Valdezate S, Cobo F, Monzon S, Medina-Pascual MJ, Zaballos A, Cuesta I, Pino-Rosa S, Villalon P.	Antibiotics (Basel)	10.3390/antibiotics10030304	2021
Enzymology	Multimodular fused acetyl-feruloyl esterases from soil and gut Bacteroidetes improve xylanase depolymerization of recalcitrant biomass.	Kmezik C, Bonzom C, Olsson L, Mazurkewich S, Larsbrink J.	Biotechnol Biofuels	10.1186/s13068-020-01698-9	2020
Genetics	The estrobolome: Estrogen-metabolizing pathways of the gut microbiome and their relation to breast cancer.	Larnder AH, Manges AR, Murphy RA.	Int J Cancer	10.1002/ijc.35427	2025
	Bacteroides vulgatus attenuates experimental mice colitis through modulating gut microbiota and immune responses.	Liu L, Xu M, Lan R, Hu D, Li X, Qiao L, Zhang S, Lin X, Yang J, Ren Z, Xu J.	Front Immunol	10.3389/fimmu.2022.1036196	2022
Phylogeny	Multiple classes and isoforms of the RNA polymerase recycling motor protein HelD.	Larsen JS, Miller M, Oakley AJ, Dixon NE, Lewis PJ.	Microbiologyopen	10.1002/mbo3.1251	2021
Enzymology	Carbohydrate esterases involved in deacetylation of food components by the human gut microbiota.	La Rosa SL, Lindstad LJ, Westereng B.	Essays Biochem	10.1042/ebc20220161	2023
	Complex carbohydrate utilization by gut bacteria modulates host food consumption.	Yu KB, Son C, Ozcan E, Chandra A, Paramo J, Varghese A, Roice A, Finnigan D, Chandra F, Novoselov A, Kazmi SA, Lum GR, Lopez-Romero A, Lynch JB, Hsiao EY.	Nat Commun	10.1038/s41467-025-63372-8	2025
Metabolism	PULDB: the expanded database of Polysaccharide Utilization Loci.	Terrapon N, Lombard V, Drula E, Lapebie P, Al-Masaudi S, Gilbert HJ, Henrissat B.	Nucleic Acids Res	10.1093/nar/gkx1022	2018
	Bacteroides ovatus accelerates metformin-induced vitamin B12 deficiency in type 2 diabetes patients by accumulating cobalamin.	Chen M, Shu Y, Li Q, Kang Z, Liu T, Zhou H, Huang W, Zhang W.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00419-y	2023
	beta-glucans: a potential source for maintaining gut microbiota and the immune system.	Singh RP, Bhardwaj A.	Front Nutr	10.3389/fnut.2023.1143682	2023
Metabolism	dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates.	Ausland C, Zheng J, Yi H, Yang B, Li T, Feng X, Zheng B, Yin Y.	Nucleic Acids Res	10.1093/nar/gkaa742	2021
Metabolism	Strain-level fitness in the gut microbiome is an emergent property of glycans and a single metabolite.	Park SY, Rao C, Coyte KZ, Kuziel GA, Zhang Y, Huang W, Franzosa EA, Weng JK, Huttenhower C, Rakoff-Nahoum S.	Cell	10.1016/j.cell.2022.01.002	2022
Metabolism	A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus.	Foley MH, Dejean G, Hemsworth GR, Davies GJ, Brumer H, Koropatkin NM.	J Mol Biol	10.1016/j.jmb.2019.01.008	2019
Metabolism	Substrate Use Prioritization by a Coculture of Five Species of Gut Bacteria Fed Mixtures of Arabinoxylan, Xyloglucan, beta-Glucan, and Pectin.	Liu Y, Heath AL, Galland B, Rehrer N, Drummond L, Wu XY, Bell TJ, Lawley B, Sims IM, Tannock GW.	Appl Environ Microbiol	10.1128/aem.01905-19	2020
Metabolism	Microbiota metabolism of intestinal amino acids impacts host nutrient homeostasis and physiology.	Li TT, Chen X, Huo D, Arifuzzaman M, Qiao S, Jin WB, Shi H, Li XV, JRI Live Cell Bank Consortium, Iliev ID, Artis D, Guo CJ.	Cell Host Microbe	10.1016/j.chom.2024.04.004	2024
	Proanthocyanidin-enriched cranberry extract induces resilient bacterial community dynamics in a gnotobiotic mouse model.	Neto CC, Mortzfeld BM, Turbitt JR, Bhattarai SK, Yeliseyev V, DiBenedetto N, Bry L, Bucci V.	Microb Cell	10.15698/mic2021.06.752	2021
	Polysaccharide utilization loci encoded DUF1735 likely functions as membrane-bound spacer for carbohydrate active enzymes.	Hameleers L, Gaenssle LA, Bertran-Llorens S, Pijning T, Jurak E.	FEBS Open Bio	10.1002/2211-5463.13816	2024
Transcriptome	Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.	Helbert W, Poulet L, Drouillard S, Mathieu S, Loiodice M, Couturier M, Lombard V, Terrapon N, Turchetto J, Vincentelli R, Henrissat B.	Proc Natl Acad Sci U S A	10.1073/pnas.1815791116	2019
Metabolism	Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.	Tamura K, Foley MH, Gardill BR, Dejean G, Schnizlein M, Bahr CME, Louise Creagh A, van Petegem F, Koropatkin NM, Brumer H.	Cell Mol Life Sci	10.1007/s00018-019-03115-3	2019
	Study on the Biochemical Characterization and Selectivity of Three beta-Glucosidases From Bifidobacterium adolescentis ATCC15703.	Hu Y, Zhai L, Hong H, Shi Z, Zhao J, Liu D.	Front Microbiol	10.3389/fmicb.2022.860014	2022
	4-O-Methyl Modifications of Glucuronic Acids in Xylans Are Indispensable for Substrate Discrimination by GH67 alpha-Glucuronidase from Bacillus halodurans C-125.	Yagi H, Maehara T, Tanaka T, Takehara R, Teramoto K, Yaoi K, Kaneko S.	J Appl Glycosci (1999)	10.5458/jag.jag.jag-2017_016	2017
	Analysis of Six tonB Gene Homologs in Bacteroides fragilis Revealed That tonB3 is Essential for Survival in Experimental Intestinal Colonization and Intra-Abdominal Infection.	Parker AC, Seals NL, Baccanale CL, Rocha ER.	Infect Immun	10.1128/iai.00469-21	2022
Genetics	Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria.	Pudlo NA, Urs K, Crawford R, Pirani A, Atherly T, Jimenez R, Terrapon N, Henrissat B, Peterson D, Ziemer C, Snitkin E, Martens EC.	mSystems	10.1128/msystems.00947-21	2022
	Colonic in vitro fermentation of mycoprotein promotes shifts in gut microbiota, with enrichment of Bacteroides species.	Colosimo R, Harris HC, Ahn-Jarvis J, Troncoso-Rey P, Finnigan TJA, Wilde PJ, Warren FJ.	Commun Biol	10.1038/s42003-024-05893-4	2024
	Lipidome of the Bacteroides Genus Containing New Peptidolipid and Sphingolipid Families Revealed by Multiple-Stage Mass Spectrometry.	Frankfater CF, Sartorio MG, Valguarnera E, Feldman MF, Hsu FF.	Biochemistry	10.1021/acs.biochem.2c00664	2023
Pathogenicity	Muribaculaceae Genomes Assembled from Metagenomes Suggest Genetic Drivers of Differential Response to Acarbose Treatment in Mice.	Smith BJ, Miller RA, Schmidt TM.	mSphere	10.1128/msphere.00851-21	2021
Metabolism	Nanaerobic growth enables direct visualization of dynamic cellular processes in human gut symbionts.	Garcia-Bayona L, Coyne MJ, Hantman N, Montero-Llopis P, Von SS, Ito T, Malamy MH, Basler M, Barquera B, Comstock LE.	Proc Natl Acad Sci U S A	10.1073/pnas.2009556117	2020
Phylogeny	Bacteroides isolated from four mammalian hosts lack host-specific 16S rRNA gene phylogeny and carbon and nitrogen utilization patterns.	Atherly T, Ziemer CJ.	Microbiologyopen	10.1002/mbo3.159	2014
Enzymology	Structure and function of microbial alpha-l-fucosidases: a mini review.	Wu H, Owen CD, Juge N.	Essays Biochem	10.1042/ebc20220158	2023
	Prebiotics from Seaweeds: An Ocean of Opportunity?	Cherry P, Yadav S, Strain CR, Allsopp PJ, McSorley EM, Ross RP, Stanton C.	Mar Drugs	10.3390/md17060327	2019
Metabolism	The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary beta-mannans.	La Rosa SL, Leth ML, Michalak L, Hansen ME, Pudlo NA, Glowacki R, Pereira G, Workman CT, Arntzen MO, Pope PB, Martens EC, Hachem MA, Westereng B.	Nat Commun	10.1038/s41467-019-08812-y	2019
Enzymology	Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes.	Zhang M, Chekan JR, Dodd D, Hong PY, Radlinski L, Revindran V, Nair SK, Mackie RI, Cann I.	Proc Natl Acad Sci U S A	10.1073/pnas.1406156111	2014
	Abundance of Gut Microbiota, Concentration of Short-Chain Fatty Acids, and Inflammatory Markers Associated with Elevated Body Fat, Overweight, and Obesity in Female Adolescents.	Miranda VPN, Dos Santos Amorim PR, Bastos RR, de Faria ER, de Castro Moreira ME, do Carmo Castro Franceschini S, do Carmo Gouveia Peluzio M, de Luces Fortes Ferreira CL, Priore SE.	Mediators Inflamm	10.1155/2019/7346863	2019
	Characterization of Multiple Alginate Lyases in a Highly Efficient Alginate-Degrading Vibrio Strain and Its Degradation Strategy.	He X, Zhang Y, Wang X, Zhu X, Chen L, Liu W, Lyu Q, Ran L, Cheng H, Zhang XH.	Appl Environ Microbiol	10.1128/aem.01389-22	2022
Metabolism	Glycan complexity dictates microbial resource allocation in the large intestine.	Rogowski A, Briggs JA, Mortimer JC, Tryfona T, Terrapon N, Lowe EC, Basle A, Morland C, Day AM, Zheng H, Rogers TE, Thompson P, Hawkins AR, Yadav MP, Henrissat B, Martens EC, Dupree P, Gilbert HJ, Bolam DN.	Nat Commun	10.1038/ncomms8481	2015
	Dietary sugars silence the master regulator of carbohydrate utilization in human gut Bacteroides species.	Pearce VH, Groisman EA, Townsend GE.	Gut Microbes	10.1080/19490976.2023.2221484	2023
Pathogenicity	The Crohn's disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response.	Lavoie S, Conway KL, Lassen KG, Jijon HB, Pan H, Chun E, Michaud M, Lang JK, Gallini Comeau CA, Dreyfuss JM, Glickman JN, Vlamakis H, Ananthakrishnan A, Kostic A, Garrett WS, Xavier RJ.	Elife	10.7554/elife.39982	2019
Metabolism	Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.	Tauzin AS, Kwiatkowski KJ, Orlovsky NI, Smith CJ, Creagh AL, Haynes CA, Wawrzak Z, Brumer H, Koropatkin NM.	mBio	10.1128/mbio.02134-15	2016
Enzymology	The crystal structure of the N-acetylglucosamine 2-epimerase from Nostoc sp. KVJ10 reveals the true dimer.	Halsor MJH, Rothweiler U, Altermark B, Raeder ILU.	Acta Crystallogr D Struct Biol	10.1107/s2059798318017047	2019
	Selective utilization of medicinal polysaccharides by human gut Bacteroides and Parabacteroides species.	Qu Z, Liu H, Yang J, Zheng L, Huang J, Wang Z, Xie C, Zuo W, Xia X, Sun L, Zhou Y, Xie Y, Lu J, Zhu Y, Yu L, Liu L, Zhou H, Dai L, Leung EL.	Nat Commun	10.1038/s41467-025-55845-7	2025
	¹³C-Stable isotope resolved metabolomics uncovers dynamic biochemical landscape of gut microbiome-host organ communications in mice.	Xiao X, Zhou Y, Li X, Jin J, Durham J, Ye Z, Wang Y, Hennig B, Deng P.	Microbiome	10.1186/s40168-024-01808-x	2024
	Gut Bacteroides act in a microbial consortium to cause susceptibility to severe malaria.	Mandal RK, Mandal A, Denny JE, Namazii R, John CC, Schmidt NW.	Nat Commun	10.1038/s41467-023-42235-0	2023
Enzymology	Two distinct gut microbial pathways contribute to meta-organismal production of phenylacetylglutamine with links to cardiovascular disease.	Zhu Y, Dwidar M, Nemet I, Buffa JA, Sangwan N, Li XS, Anderson JT, Romano KA, Fu X, Funabashi M, Wang Z, Keranahalli P, Battle S, Tittle AN, Hajjar AM, Gogonea V, Fischbach MA, DiDonato JA, Hazen SL.	Cell Host Microbe	10.1016/j.chom.2022.11.015	2023
	Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism.	Spanogiannopoulos P, Kyaw TS, Guthrie BGH, Bradley PH, Lee JV, Melamed J, Malig YNA, Lam KN, Gempis D, Sandy M, Kidder W, Van Blarigan EL, Atreya CE, Venook A, Gerona RR, Goga A, Pollard KS, Turnbaugh PJ.	Nat Microbiol	10.1038/s41564-022-01226-5	2022
	Consumption of Extruded Sorghum SC319 Improved Gut Microbiota at Genus Level and Reduced Anthropometric Markers in Men with Overweight: A Randomized Controlled Clinical Trial.	Lucio H, Anunciacao P, da Silva B, da Silva A, Queiroz V, de Carvalho C, Pinheiro-Sant'Ana H, Martino H.	Nutrients	10.3390/nu15173786	2023
Metabolism	A surface-exposed GH26 beta-mannanase from Bacteroides ovatus: Structure, role, and phylogenetic analysis of BoMan26B.	Bagenholm V, Wiemann M, Reddy SK, Bhattacharya A, Rosengren A, Logan DT, Stalbrand H.	J Biol Chem	10.1074/jbc.ra118.007171	2019
	SARS-CoV-2-specific T cells in unexposed adults display broad trafficking potential and cross-react with commensal antigens.	Bartolo L, Afroz S, Pan YG, Xu R, Williams L, Lin CF, Tanes C, Bittinger K, Friedman ES, Gimotty PA, Wu GD, Su LF.	Sci Immunol	10.1126/sciimmunol.abn3127	2022
Phylogeny	Predictable modulation of cancer treatment outcomes by the gut microbiota.	Heshiki Y, Vazquez-Uribe R, Li J, Ni Y, Quainoo S, Imamovic L, Li J, Sorensen M, Chow BKC, Weiss GJ, Xu A, Sommer MOA, Panagiotou G.	Microbiome	10.1186/s40168-020-00811-2	2020
Enzymology	Biochemical Basis of Xylooligosaccharide Utilisation by Gut Bacteria.	Singh RP, Bhaiyya R, Thakur R, Niharika J, Singh C, Latousakis D, Saalbach G, Nepogodiev SA, Singh P, Sharma SC, Sengupta S, Juge N, Field RA.	Int J Mol Sci	10.3390/ijms23062992	2022
	Mechanism of Cooperative Degradation of Gum Arabic Arabinogalactan Protein by Bifidobacterium longum Surface Enzymes.	Sasaki Y, Komeno M, Ishiwata A, Horigome A, Odamaki T, Xiao JZ, Tanaka K, Ito Y, Kitahara K, Ashida H, Fujita K.	Appl Environ Microbiol	10.1128/aem.02187-21	2022
	The evolution of cooperation within the gut microbiota.	Rakoff-Nahoum S, Foster KR, Comstock LE.	Nature	10.1038/nature17626	2016
	A molecular toolkit for heterologous protein secretion across Bacteroides species.	Yeh YH, Kelly VW, Rahman Pour R, Sirk SJ.	Nat Commun	10.1038/s41467-024-53845-7	2024
	Enhancing coevolutionary signals in protein-protein interaction prediction through clade-wise alignment integration.	Fang T, Szklarczyk D, Hachilif R, von Mering C.	Sci Rep	10.1038/s41598-024-55655-9	2024
Metabolism	Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates.	Fehlner-Peach H, Magnabosco C, Raghavan V, Scher JU, Tett A, Cox LM, Gottsegen C, Watters A, Wiltshire-Gordon JD, Segata N, Bonneau R, Littman DR.	Cell Host Microbe	10.1016/j.chom.2019.10.013	2019
Metabolism	Synthetic Microbiomes on the Rise-Application in Deciphering the Role of Microbes in Host Health and Disease.	Bolsega S, Bleich A, Basic M.	Nutrients	10.3390/nu13114173	2021
Pathogenicity	Persistence of Bacteroides ovatus under simulated sunlight irradiation.	Dong S, Hong PY, Nguyen TH.	BMC Microbiol	10.1186/1471-2180-14-178	2014
Pathogenicity	A multi-omics spatial framework for host-microbiome dissection within the intestinal tissue microenvironment.	Zhu B, Bai Y, Yeo YY, Lu X, Rovira-Clave X, Chen H, Yeung J, Nkosi D, Glickman J, Delgado-Gonzalez A, Gerber GK, Angelo M, Shalek AK, Nolan GP, Jiang S.	Nat Commun	10.1038/s41467-025-56237-7	2025
	Gut Microbiota Contributes to Spontaneous Colitis in E3 Ligase Itch-Deficient Mice.	Kathania M, Tsakem EL, Theiss AL, Venuprasad K.	J Immunol	10.4049/jimmunol.1701478	2020
Pathogenicity	Citrus polymethoxyflavones attenuate metabolic syndrome by regulating gut microbiome and amino acid metabolism.	Zeng SL, Li SZ, Xiao PT, Cai YY, Chu C, Chen BZ, Li P, Li J, Liu EH.	Sci Adv	10.1126/sciadv.aax6208	2020
	Hemicellulose-Derived Oligosaccharides: Emerging Prebiotics in Disease Alleviation.	Jana UK, Kango N, Pletschke B.	Front Nutr	10.3389/fnut.2021.670817	2021
Metabolism	Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.	Xu Q, Mengin-Lecreulx D, Liu XW, Patin D, Farr CL, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA.	mBio	10.1128/mbio.02327-14	2015
	Novel Siphoviridae Bacteriophages Infecting Bacteroides uniformis Contain Diversity Generating Retroelement.	Hedzet S, Rupnik M, Accetto T.	Microorganisms	10.3390/microorganisms9050892	2021
Metabolism	Intestinal microbiota composition modulates choline bioavailability from diet and accumulation of the proatherogenic metabolite trimethylamine-N-oxide.	Romano KA, Vivas EI, Amador-Noguez D, Rey FE.	mBio	10.1128/mbio.02481-14	2015
	Deep-learning-enabled antibiotic discovery through molecular de-extinction.	Wan F, Torres MDT, Peng J, de la Fuente-Nunez C.	Nat Biomed Eng	10.1038/s41551-024-01201-x	2024
	Identification of diversity-generating retroelements in human microbiomes.	Ye Y.	Int J Mol Sci	10.3390/ijms150814234	2014
	Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements.	Coyne MJ, Roelofs KG, Comstock LE.	BMC Genomics	10.1186/s12864-016-2377-z	2016
Pathogenicity	Berberine Promotes Induction of Immunological Tolerance to an Allograft via Downregulating Memory CD8⁺ T-Cells Through Altering the Gut Microbiota.	Qiu F, Lu W, Ye S, Liu H, Zeng Q, Huang H, Liang CL, Chen Y, Zheng F, Zhang Q, Lu CJ, Dai Z.	Front Immunol	10.3389/fimmu.2021.646831	2021
	Design, construction, and in vivo augmentation of a complex gut microbiome.	Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.	Cell	10.1016/j.cell.2022.08.003	2022
Metabolism	A novel approach for the prediction of species-specific biotransformation of xenobiotic/drug molecules by the human gut microbiota.	Sharma AK, Jaiswal SK, Chaudhary N, Sharma VK.	Sci Rep	10.1038/s41598-017-10203-6	2017
Pathogenicity	Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans.	Patnode ML, Beller ZW, Han ND, Cheng J, Peters SL, Terrapon N, Henrissat B, Le Gall S, Saulnier L, Hayashi DK, Meynier A, Vinoy S, Giannone RJ, Hettich RL, Gordon JI.	Cell	10.1016/j.cell.2019.08.011	2019
Metabolism	Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes.	Dodd D, Mackie RI, Cann IK.	Mol Microbiol	10.1111/j.1365-2958.2010.07473.x	2011
	Crystal structure and metal binding properties of the periplasmic iron component EfeM from Pseudomonas syringae EfeUOB/M iron-transport system.	Rajasekaran MB, Hussain R, Siligardi G, Andrews SC, Watson KA.	Biometals	10.1007/s10534-022-00389-2	2022
	How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding.	Berkhout MD, Plugge CM, Belzer C.	Glycobiology	10.1093/glycob/cwab105	2022
Metabolism	An ATP Binding Cassette Transporter Mediates the Uptake of alpha-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates.	Ejby M, Fredslund F, Andersen JM, Vujicic Zagar A, Henriksen JR, Andersen TL, Svensson B, Slotboom DJ, Abou Hachem M.	J Biol Chem	10.1074/jbc.m116.746529	2016
Metabolism	Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.	Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Yeoman CJ, Miller ME, Fields CJ, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, White BA, Mosoni P.	BMC Genomics	10.1186/s12864-016-2472-1	2016
Phylogeny	Imaging the in vivo growth patterns of bacteria in human gut Microbiota.	Lin L, Song J, Li J, Zuo X, Wei H, Yang C, Wang W.	Gut Microbes	10.1080/19490976.2021.1960134	2021
Metabolism	Novel glycoside hydrolases identified by screening a Chinese Holstein dairy cow rumen-derived metagenome library.	Zhao S, Wang J, Bu D, Liu K, Zhu Y, Dong Z, Yu Z.	Appl Environ Microbiol	10.1128/aem.00361-10	2010
Metabolism	Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.	Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.	Cell	10.1016/j.cell.2023.05.037	2023
	Microviridae goes temperate: microvirus-related proviruses reside in the genomes of Bacteroidetes.	Krupovic M, Forterre P.	PLoS One	10.1371/journal.pone.0019893	2011
	Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.	Arias MC, Danchin EG, Coutinho P, Henrissat B, Ball S.	Mob Genet Elements	10.4161/mge.20375	2012
Metabolism	Glucuronides in the gut: Sugar-driven symbioses between microbe and host.	Pellock SJ, Redinbo MR.	J Biol Chem	10.1074/jbc.r116.767434	2017
Metabolism	Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393.	Hong PY, Iakiviak M, Dodd D, Zhang M, Mackie RI, Cann I.	Appl Environ Microbiol	10.1128/aem.03176-13	2014
Metabolism	Functional and modular analyses of diverse endoglucanases from Ruminococcus albus 8, a specialist plant cell wall degrading bacterium.	Iakiviak M, Devendran S, Skorupski A, Moon YH, Mackie RI, Cann I.	Sci Rep	10.1038/srep29979	2016
Metabolism	The GH130 Family of Mannoside Phosphorylases Contains Glycoside Hydrolases That Target beta-1,2-Mannosidic Linkages in Candida Mannan.	Cuskin F, Basle A, Ladeveze S, Day AM, Gilbert HJ, Davies GJ, Potocki-Veronese G, Lowe EC.	J Biol Chem	10.1074/jbc.m115.681460	2015
Metabolism	Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.	Xu Q, Rawlings ND, Farr CL, Chiu HJ, Grant JC, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Weekes D, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.	PLoS One	10.1371/journal.pone.0021875	2011
Pathogenicity	Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation.	Arifuzzaman M, Won TH, Li TT, Yano H, Digumarthi S, Heras AF, Zhang W, Parkhurst CN, Kashyap S, Jin WB, Putzel GG, Tsou AM, Chu C, Wei Q, Grier A, JRI IBD Live Cell Bank Consortium, Worgall S, Guo CJ, Schroeder FC, Artis D.	Nature	10.1038/s41586-022-05380-y	2022
Metabolism	Transcriptomic analysis of xylan utilization systems in Paenibacillus sp. strain JDR-2.	Sawhney N, Crooks C, St John F, Preston JF.	Appl Environ Microbiol	10.1128/aem.03523-14	2015
Phylogeny	GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems.	Zhou F, Chen H, Xu Y.	BMC Microbiol	10.1186/1471-2180-10-69	2010
Pathogenicity	Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.	Ng KM, Aranda-Diaz A, Tropini C, Frankel MR, Van Treuren W, O'Loughlin CT, Merrill BD, Yu FB, Pruss KM, Oliveira RA, Higginbottom SK, Neff NF, Fischbach MA, Xavier KB, Sonnenburg JL, Huang KC.	Cell Host Microbe	10.1016/j.chom.2019.10.011	2019
Metabolism	Spatially remote motifs cooperatively affect substrate preference of a ruminal GH26-type endo-beta-1,4-mannanase.	Mandelli F, de Morais MAB, de Lima EA, Oliveira L, Persinoti GF, Murakami MT.	J Biol Chem	10.1074/jbc.ra120.012583	2020
Metabolism	Human-Derived Bifidobacterium dentium Modulates the Mammalian Serotonergic System and Gut-Brain Axis.	Engevik MA, Luck B, Visuthranukul C, Ihekweazu FD, Engevik AC, Shi Z, Danhof HA, Chang-Graham AL, Hall A, Endres BT, Haidacher SJ, Horvath TD, Haag AM, Devaraj S, Garey KW, Britton RA, Hyser JM, Shroyer NF, Versalovic J.	Cell Mol Gastroenterol Hepatol	10.1016/j.jcmgh.2020.08.002	2021
Genetics	Comparative genomics of transport proteins in seven Bacteroides species.	Zafar H, Saier MH.	PLoS One	10.1371/journal.pone.0208151	2018
	The prevalence of species and strains in the human microbiome: a resource for experimental efforts.	Kraal L, Abubucker S, Kota K, Fischbach MA, Mitreva M.	PLoS One	10.1371/journal.pone.0097279	2014
Metabolism	The microbial gbu gene cluster links cardiovascular disease risk associated with red meat consumption to microbiota L-carnitine catabolism.	Buffa JA, Romano KA, Copeland MF, Cody DB, Zhu W, Galvez R, Fu X, Ward K, Ferrell M, Dai HJ, Skye S, Hu P, Li L, Parlov M, McMillan A, Wei X, Nemet I, Koeth RA, Li XS, Wang Z, Sangwan N, Hajjar AM, Dwidar M, Weeks TL, Bergeron N, Krauss RM, Tang WHW, Rey FE, DiDonato JA, Gogonea V, Gerberick GF, Garcia-Garcia JC, Hazen SL.	Nat Microbiol	10.1038/s41564-021-01010-x	2022
Metabolism	Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides.	Tamura K, Hemsworth GR, Dejean G, Rogers TE, Pudlo NA, Urs K, Jain N, Davies GJ, Martens EC, Brumer H.	Cell Rep	10.1016/j.celrep.2017.09.049	2017
Metabolism	Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level.	Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Chambon C, Yeoman CJ, Berg Miller ME, Fields CJ, Martens E, Terrapon N, Henrissat B, White BA, Mosoni P.	BMC Genomics	10.1186/s12864-016-2680-8	2016
Metabolism	A metagenomic beta-glucuronidase uncovers a core adaptive function of the human intestinal microbiome.	Gloux K, Berteau O, El Oumami H, Beguet F, Leclerc M, Dore J.	Proc Natl Acad Sci U S A	10.1073/pnas.1000066107	2011
Enzymology	Adding to Yersinia enterocolitica gene pool diversity: two cryptic plasmids from a biotype 1A isolate.	Lepka D, Kerrinnes T, Skiebe E, Hahn B, Fruth A, Wilharm G.	J Biomed Biotechnol	10.1155/2009/398434	2009
Metabolism	Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks.	Ravcheev DA, Godzik A, Osterman AL, Rodionov DA.	BMC Genomics	10.1186/1471-2164-14-873	2013
	Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model.	Hsu BB, Gibson TE, Yeliseyev V, Liu Q, Lyon L, Bry L, Silver PA, Gerber GK.	Cell Host Microbe	10.1016/j.chom.2019.05.001	2019
	Commensal Microbiota Modulation of Natural Resistance to Virus Infection.	Stefan KL, Kim MV, Iwasaki A, Kasper DL.	Cell	10.1016/j.cell.2020.10.047	2020
	Deciphering microbial interactions in synthetic human gut microbiome communities.	Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP.	Mol Syst Biol	10.15252/msb.20178157	2018
Metabolism	Role of glycoside phosphorylases in mannose foraging by human gut bacteria.	Ladeveze S, Tarquis L, Cecchini DA, Bercovici J, Andre I, Topham CM, Morel S, Laville E, Monsan P, Lombard V, Henrissat B, Potocki-Veronese G.	J Biol Chem	10.1074/jbc.m113.483628	2013
Metabolism	Metabolic, Epigenetic, and Transgenerational Effects of Gut Bacterial Choline Consumption.	Romano KA, Martinez-Del Campo A, Kasahara K, Chittim CL, Vivas EI, Amador-Noguez D, Balskus EP, Rey FE.	Cell Host Microbe	10.1016/j.chom.2017.07.021	2017
Enzymology	Evidence that GH115 alpha-glucuronidase activity, which is required to degrade plant biomass, is dependent on conformational flexibility.	Rogowski A, Basle A, Farinas CS, Solovyova A, Mortimer JC, Dupree P, Gilbert HJ, Bolam DN.	J Biol Chem	10.1074/jbc.m113.525295	2014
	Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut.	Lim B, Zimmermann M, Barry NA, Goodman AL.	Cell	10.1016/j.cell.2017.03.045	2017
Metabolism	Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity.	Dejean G, Tauzin AS, Bennett SW, Creagh AL, Brumer H.	Appl Environ Microbiol	10.1128/aem.01491-19	2019
	gyrA mutations associated with quinolone resistance in Bacteroides fragilis group strains.	Oh H, El Amin N, Davies T, Appelbaum PC, Edlund C.	Antimicrob Agents Chemother	10.1128/aac.45.7.1977-1981.2001	2001
Metabolism	The Biosynthesis of Lipooligosaccharide from Bacteroides thetaiotaomicron.	Jacobson AN, Choudhury BP, Fischbach MA.	mBio	10.1128/mbio.02289-17	2018
Phylogeny	High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions.	Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N.	Nucleic Acids Res	10.1093/nar/gkt1070	2013
Pathogenicity	In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.	Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00595-08	2009
	Autometa: automated extraction of microbial genomes from individual shotgun metagenomes.	Miller IJ, Rees ER, Ross J, Miller I, Baxa J, Lopera J, Kerby RL, Rey FE, Kwan JC.	Nucleic Acids Res	10.1093/nar/gkz148	2019
Metabolism	Reciprocal Prioritization to Dietary Glycans by Gut Bacteria in a Competitive Environment Promotes Stable Coexistence.	Tuncil YE, Xiao Y, Porter NT, Reuhs BL, Martens EC, Hamaker BR.	mBio	10.1128/mbio.01068-17	2017
Metabolism	Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition.	Weagley JS, Zaydman M, Venkatesh S, Sasaki Y, Damaraju N, Yenkin A, Buchser W, Rodionov DA, Osterman A, Ahmed T, Barratt MJ, DiAntonio A, Milbrandt J, Gordon JI.	Cell Rep	10.1016/j.celrep.2022.110738	2022
Pathogenicity	Acceptive Immunity: The Role of Fucosylated Glycans in Human Host-Microbiome Interactions.	Kononova S, Litvinova E, Vakhitov T, Skalinskaya M, Sitkin S.	Int J Mol Sci	10.3390/ijms22083854	2021
Pathogenicity	In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria.	Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.01038-10	2011
Genetics	Structure and function of the DUF2233 domain in bacteria and in the human mannose 6-phosphate uncovering enzyme.	Das D, Lee WS, Grant JC, Chiu HJ, Farr CL, Vance J, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Kornfeld S, Wilson IA.	J Biol Chem	10.1074/jbc.m112.434977	2013
	Development and evaluation of oligonucleotide chip based on the 16S-23S rRNA gene spacer region for detection of pathogenic microorganisms associated with sepsis.	Kim CM, Song ES, Jang HJ, Kim HJ, Lee S, Shin JH, Kim SJ, Jeong SH, Jeong J, Koh K, Choi GE, Lee EY, Chang CL.	J Clin Microbiol	10.1128/jcm.01130-09	2010
Metabolism	A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection.	Jacobson A, Lam L, Rajendram M, Tamburini F, Honeycutt J, Pham T, Van Treuren W, Pruss K, Stabler SR, Lugo K, Bouley DM, Vilches-Moure JG, Smith M, Sonnenburg JL, Bhatt AS, Huang KC, Monack D.	Cell Host Microbe	10.1016/j.chom.2018.07.002	2018
Metabolism	The Stringent Response Determines the Ability of a Commensal Bacterium to Survive Starvation and to Persist in the Gut.	Schofield WB, Zimmermann-Kogadeeva M, Zimmermann M, Barry NA, Goodman AL.	Cell Host Microbe	10.1016/j.chom.2018.06.002	2018
Pathogenicity	Evaluation of impact of exposure of Sudan azo dyes and their metabolites on human intestinal bacteria.	Pan H, Feng J, He GX, Cerniglia CE, Chen H.	Anaerobe	10.1016/j.anaerobe.2012.05.002	2012
Enzymology	Gastrointestinal localization of metronidazole by a lactobacilli-inspired tetramic acid motif improves treatment outcomes in the hamster model of Clostridium difficile infection.	Cherian PT, Wu X, Yang L, Scarborough JS, Singh AP, Alam ZA, Lee RE, Hurdle JG.	J Antimicrob Chemother	10.1093/jac/dkv231	2015
Metabolism	The endogenous galactofuranosidase GlfH1 hydrolyzes mycobacterial arabinogalactan.	Shen L, Viljoen A, Villaume S, Joe M, Halloum I, Chene L, Mery A, Fabre E, Takegawa K, Lowary TL, Vincent SP, Kremer L, Guerardel Y, Mariller C.	J Biol Chem	10.1074/jbc.ra119.011817	2020
	Bacteroides ovatus as the predominant commensal intestinal microbe causing a systemic antibody response in inflammatory bowel disease.	Saitoh S, Noda S, Aiba Y, Takagi A, Sakamoto M, Benno Y, Koga Y.	Clin Diagn Lab Immunol	10.1128/cdli.9.1.54-59.2002	2002
	DisoMCS: Accurately Predicting Protein Intrinsically Disordered Regions Using a Multi-Class Conservative Score Approach.	Wang Z, Yang Q, Li T, Cong P.	PLoS One	10.1371/journal.pone.0128334	2015
Enzymology	Structural bases for N-glycan processing by mannoside phosphorylase.	Ladeveze S, Cioci G, Roblin P, Mourey L, Tranier S, Potocki-Veronese G.	Acta Crystallogr D Biol Crystallogr	10.1107/s1399004715006604	2015
Metabolism	Synergy between Cell Surface Glycosidases and Glycan-Binding Proteins Dictates the Utilization of Specific Beta(1,3)-Glucans by Human Gut Bacteroides.	Dejean G, Tamura K, Cabrera A, Jain N, Pudlo NA, Pereira G, Viborg AH, Van Petegem F, Martens EC, Brumer H.	mBio	10.1128/mbio.00095-20	2020
Metabolism	Toxicological significance of azo dye metabolism by human intestinal microbiota.	Feng J, Cerniglia CE, Chen H.	Front Biosci (Elite Ed)	10.2741/e400	2012
	Extensive profiling of a complex microbial community by high-throughput sequencing.	Hill JE, Seipp RP, Betts M, Hawkins L, Van Kessel AG, Crosby WL, Hemmingsen SM.	Appl Environ Microbiol	10.1128/aem.68.6.3055-3066.2002	2002
Phylogeny	PCR assay for species-specific identification of Bacteroides thetaiotaomicron.	Teng LJ, Hsueh PR, Tsai JC, Chiang FL, Chen CY, Ho SW, Luh KT.	J Clin Microbiol	10.1128/jcm.38.4.1672-1675.2000	2000
Genetics	Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.	Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G.	Nat Biotechnol	10.1038/nbt.4037	2018
Enzymology	Rapid and sensitive detection of Pseudomonas aeruginosa in chlorinated water and aerosols targeting gyrB gene using real-time PCR.	Lee CS, Wetzel K, Buckley T, Wozniak D, Lee J.	J Appl Microbiol	10.1111/j.1365-2672.2011.05107.x	2011
Metabolism	A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes.	Larsbrink J, Rogers TE, Hemsworth GR, McKee LS, Tauzin AS, Spadiut O, Klinter S, Pudlo NA, Urs K, Koropatkin NM, Creagh AL, Haynes CA, Kelly AG, Cederholm SN, Davies GJ, Martens EC, Brumer H.	Nature	10.1038/nature12907	2014
Metabolism	Evolution and multiplicity of arginine decarboxylases in polyamine biosynthesis and essential role in Bacillus subtilis biofilm formation.	Burrell M, Hanfrey CC, Murray EJ, Stanley-Wall NR, Michael AJ.	J Biol Chem	10.1074/jbc.m110.163154	2010
Genetics	Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.	Dubinkina VB, Ischenko DS, Ulyantsev VI, Tyakht AV, Alexeev DG.	BMC Bioinformatics	10.1186/s12859-015-0875-7	2016
Pathogenicity	In vitro activities of gatifloxacin, two other quinolones, and five nonquinolone antimicrobials against obligately anaerobic bacteria.	Schaumann R, Ackermann G, Pless B, Claros MC, Rodloff AC.	Antimicrob Agents Chemother	10.1128/aac.43.11.2783	1999
Metabolism	Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics.	Baranwal M, Clark RL, Thompson J, Sun Z, Hero AO, Venturelli OS.	Elife	10.7554/elife.73870	2022
Genetics	Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.	Acuna-Amador L, Primot A, Cadieu E, Roulet A, Barloy-Hubler F.	BMC Genomics	10.1186/s12864-017-4429-4	2018
Pathogenicity	In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone.	Tanaka K, Mikamo H, Nakao K, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00639-06	2006
	Longitudinal analysis of the prevalence, maintenance, and IgA response to species of the order Bacteroidales in the human gut.	Zitomersky NL, Coyne MJ, Comstock LE.	Infect Immun	10.1128/iai.01348-10	2011
	Emergence of a Thrombospondin Superfamily at the Origin of Metazoans.	Shoemark DK, Ziegler B, Watanabe H, Strompen J, Tucker RP, Ozbek S, Adams JC.	Mol Biol Evol	10.1093/molbev/msz060	2019
Enzymology	A Bacteroidetes locus dedicated to fungal 1,6-beta-glucan degradation: Unique substrate conformation drives specificity of the key endo-1,6-beta-glucanase.	Temple MJ, Cuskin F, Basle A, Hickey N, Speciale G, Williams SJ, Gilbert HJ, Lowe EC.	J Biol Chem	10.1074/jbc.m117.787606	2017
Phylogeny	Use of PCR and sodium dodecyl sulfate-polyacrylamide gel electrophoresis techniques for differentiation of Prevotella intermedia sensu stricto and Prevotella nigrescens.	Premaraj T, Kato N, Fukui K, Kato H, Watanabe K.	J Clin Microbiol	10.1128/jcm.37.4.1057-1061.1999	1999
Phylogeny	Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome.	Whitaker WR, Shepherd ES, Sonnenburg JL.	Cell	10.1016/j.cell.2017.03.041	2017
Genetics	Strain/species identification in metagenomes using genome-specific markers.	Tu Q, He Z, Zhou J.	Nucleic Acids Res	10.1093/nar/gku138	2014
	Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice.	Mark Welch JL, Hasegawa Y, McNulty NP, Gordon JI, Borisy GG.	Proc Natl Acad Sci U S A	10.1073/pnas.1711596114	2017
Enzymology	Direct quantification of the enteric bacterium Oxalobacter formigenes in human fecal samples by quantitative competitive-template PCR.	Sidhu H, Holmes RP, Allison MJ, Peck AB.	J Clin Microbiol	10.1128/jcm.37.5.1503-1509.1999	1999
Metabolism	Fidaxomicin preserves the intestinal microbiome during and after treatment of Clostridium difficile infection (CDI) and reduces both toxin reexpression and recurrence of CDI.	Louie TJ, Cannon K, Byrne B, Emery J, Ward L, Eyben M, Krulicki W.	Clin Infect Dis	10.1093/cid/cis338	2012
Enzymology	Evaluation of the ATB 32 A system for identification of anaerobic bacteria isolated from clinical specimens.	Looney WJ, Gallusser AJ, Modde HK.	J Clin Microbiol	10.1128/jcm.28.7.1519-1524.1990	1990
Enzymology	Superoxide dismutase in Bacteroides fragilis and related Bacteroides species.	Carlsson J, Wrethen J, Beckman G.	J Clin Microbiol	10.1128/jcm.6.3.280-284.1977	1977
Metabolism	A selective gut bacterial bile salt hydrolase alters host metabolism.	Yao L, Seaton SC, Ndousse-Fetter S, Adhikari AA, DiBenedetto N, Mina AI, Banks AS, Bry L, Devlin AS.	Elife	10.7554/elife.37182	2018
	Mobile genetic elements of the human gastrointestinal tract: potential for spread of antibiotic resistance genes.	Broaders E, Gahan CG, Marchesi JR.	Gut Microbes	10.4161/gmic.24627	2013
	Analysis of rRNA restriction fragment length polymorphisms from Bacteroides spp. and Bacteroides fragilis isolates associated with diarrhea in humans and animals.	Smith CJ, Callihan DR.	J Clin Microbiol	10.1128/jcm.30.4.806-812.1992	1992
Metabolism	The effects of micronutrient deficiencies on bacterial species from the human gut microbiota.	Hibberd MC, Wu M, Rodionov DA, Li X, Cheng J, Griffin NW, Barratt MJ, Giannone RJ, Hettich RL, Osterman AL, Gordon JI.	Sci Transl Med	10.1126/scitranslmed.aal4069	2017
Pathogenicity	In vitro activities of cefminox against anaerobic bacteria compared with those of nine other compounds.	Hoellman DB, Spangler SK, Jacobs MR, Appelbaum PC.	Antimicrob Agents Chemother	10.1128/aac.42.3.495	1998
Phylogeny	Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.	Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.	Appl Environ Microbiol	10.1128/aem.00380-09	2009
Pathogenicity	Enhancement of bismuth antibacterial activity with lipophilic thiol chelators.	Domenico P, Salo RJ, Novick SG, Schoch PE, Van Horn K, Cunha BA.	Antimicrob Agents Chemother	10.1128/aac.41.8.1697	1997
Enzymology	Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora.	Yamamoto T, Morotomi M, Tanaka R.	Appl Environ Microbiol	10.1128/aem.58.12.4076-4079.1992	1992
	Characterization and Ecology of Carboxymethylcellulase-Producing Anaerobic Bacterial Communities Associated with the Intestinal Tract of the Pinfish, Lagodon rhomboides.	Stellwag EJ, Smith TD, Luczkovich JJ.	Appl Environ Microbiol	10.1128/aem.61.2.813-816.1995	1995
Phylogeny	Novel application of video image processing to biochemical and antimicrobial susceptibility testing.	D'Amato RF, Isenberg HD, McKinley GA, Baron EJ, Tepper R, Shulman M.	J Clin Microbiol	10.1128/jcm.26.8.1492-1495.1988	1988
Metabolism	Evolutionary primacy of sodium bioenergetics.	Mulkidjanian AY, Galperin MY, Makarova KS, Wolf YI, Koonin EV.	Biol Direct	10.1186/1745-6150-3-13	2008
Enzymology	Superoxide dismutase in anaerobes: survey.	Gregory EM, Moore WE, Holdeman LV.	Appl Environ Microbiol	10.1128/aem.35.5.988-991.1978	1978
Enzymology	Use of randomly cloned DNA fragments for identification of Bacteroides thetaiotaomicron.	Salyers AA, Lynn SP, Gardner JF.	J Bacteriol	10.1128/jb.154.1.287-293.1983	1983
	Antimicrobial activity of DU-6681a, a parent compound of novel oral carbapenem DZ-2640.	Tanaka M, Hohmura M, Nishi T, Sato K, Hayakawa I.	Antimicrob Agents Chemother	10.1128/aac.41.6.1260	1997
Genetics	Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics.	Noel CJ, Diaz N, Sicheritz-Ponten T, Safarikova L, Tachezy J, Tang P, Fiori PL, Hirt RP.	BMC Genomics	10.1186/1471-2164-11-99	2010
Metabolism	Evidence that polygalacturonic acid may not be a major source of carbon and energy for some colonic Bacteroides species.	McCarthy RE, Salyers AA.	Appl Environ Microbiol	10.1128/aem.52.1.9-16.1986	1986
	Nature, type of linkage, quantity, and absolute configuration of (3-hydroxy) fatty acids in lipopolysaccharides from Bacteroides fragilis NCTC 9343 and related strains.	Wollenweber HW, Rietschel ET, Hofstad T, Weintraub A, Lindberg AA.	J Bacteriol	10.1128/jb.144.3.898-903.1980	1980
Metabolism	Properties of the penicillin-binding proteins of four species of the genus Bacteroides.	Piddock LJ, Wise R.	Antimicrob Agents Chemother	10.1128/aac.29.5.825	1986
Metabolism	Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome.	McNulty NP, Wu M, Erickson AR, Pan C, Erickson BK, Martens EC, Pudlo NA, Muegge BD, Henrissat B, Hettich RL, Gordon JI.	PLoS Biol	10.1371/journal.pbio.1001637	2013
Metabolism	Requirement of heme for growth of Bacteroides fragilis.	Sperry JF, Appleman MD, Wilkins TD.	Appl Environ Microbiol	10.1128/aem.34.4.386-390.1977	1977
	Biochemical and genetic analyses of a catalase from the anaerobic bacterium Bacteroides fragilis.	Rocha ER, Smith CJ.	J Bacteriol	10.1128/jb.177.11.3111-3119.1995	1995
	Calpain chronicle--an enzyme family under multidisciplinary characterization.	Sorimachi H, Hata S, Ono Y.	Proc Jpn Acad Ser B Phys Biol Sci	10.2183/pjab.87.287	2011
	Cloning and characterization of the endogenous cephalosporinase gene, cepA, from Bacteroides fragilis reveals a new subgroup of Ambler class A beta-lactamases.	Rogers MB, Parker AC, Smith CJ.	Antimicrob Agents Chemother	10.1128/aac.37.11.2391	1993
	Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism.	Jernberg C, Sullivan A, Edlund C, Jansson JK.	Appl Environ Microbiol	10.1128/aem.71.1.501-506.2005	2005
	Bacterial Lipopolysaccharide Destabilizes Influenza Viruses.	Bandoro C, Runstadler JA.	mSphere	10.1128/msphere.00267-17	2017
Metabolism	Cytokine Response after Stimulation with Key Commensal Bacteria Differ in Post-Infectious Irritable Bowel Syndrome (PI-IBS) Patients Compared to Healthy Controls.	Sundin J, Rangel I, Repsilber D, Brummer RJ.	PLoS One	10.1371/journal.pone.0134836	2015
	Development of culture methods capable of culturing a wide range of predominant species of intestinal bacteria.	Hirano R, Nishita I, Nakai R, Bito A, Sasabe R, Kurihara S.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1056866	2023
Genetics	A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer).	Nakajima A, Yoshida K, Gotoh A, Katoh T, Ojima MN, Sakanaka M, Xiao JZ, Odamaki T, Katayama T.	Microbiome Res Rep	10.20517/mrr.2022.08	2022
	Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.	Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.	Eng Microbiol	10.1016/j.engmic.2024.100147	2024
	Synthetic microbial consortia for the treatment of Clostridioides difficile infection in mice model.	Liu J, Zhu W, Lessing DJ, Chu W.	Microb Biotechnol	10.1111/1751-7915.14333	2023
Metabolism	Probiotics in human gut microbiota can degrade host glycosaminoglycans.	Kawai K, Kamochi R, Oiki S, Murata K, Hashimoto W.	Sci Rep	10.1038/s41598-018-28886-w	2018
	Next-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile.	Hirano R, Sakanaka M, Yoshimi K, Sugimoto N, Eguchi S, Yamauchi Y, Nara M, Maeda S, Ami Y, Gotoh A, Katayama T, Iida N, Kato T, Ohno H, Fukiya S, Yokota A, Nishimoto M, Kitaoka M, Nakai H, Kurihara S.	Gut Microbes	10.1080/19490976.2021.1973835	2021
Metabolism	Gut microbial carbohydrate metabolism contributes to insulin resistance.	Takeuchi T, Kubota T, Nakanishi Y, Tsugawa H, Suda W, Kwon AT, Yazaki J, Ikeda K, Nemoto S, Mochizuki Y, Kitami T, Yugi K, Mizuno Y, Yamamichi N, Yamazaki T, Takamoto I, Kubota N, Kadowaki T, Arner E, Carninci P, Ohara O, Arita M, Hattori M, Koyasu S, Ohno H.	Nature	10.1038/s41586-023-06466-x	2023
	Biochemical Characterization of Two Rhamnogalacturonan Lyases From Bacteroides ovatus ATCC 8483 With Preference for RG-I Substrates.	Wang W, Wang Y, Yi H, Liu Y, Zhang G, Zhang L, Mayo KH, Yuan Y, Zhou Y	Front Microbiol	10.3389/fmicb.2021.799875	2022
Phylogeny	Bacteroides ovatus ATCC 8483 monotherapy is superior to traditional fecal transplant and multi-strain bacteriotherapy in a murine colitis model.	Ihekweazu FD, Fofanova TY, Queliza K, Nagy-Szakal D, Stewart CJ, Engevik MA, Hulten KG, Tatevian N, Graham DY, Versalovic J, Petrosino JF, Kellermayer R	Gut Microbes	10.1080/19490976.2018.1560753	2019
Pathogenicity	Differential growth of bowel commensal Bacteroides species on plant xylans of differing structural complexity.	Centanni M, Hutchison JC, Carnachan SM, Daines AM, Kelly WJ, Tannock GW, Sims IM	Carbohydr Polym	10.1016/j.carbpol.2016.11.017	2016
Metabolism	Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus: ENZYME SYNERGY AND CRYSTAL STRUCTURE OF A beta-MANNANASE.	Bagenholm V, Reddy SK, Bouraoui H, Morrill J, Kulcinskaja E, Bahr CM, Aurelius O, Rogers T, Xiao Y, Logan DT, Martens EC, Koropatkin NM, Stalbrand H	J Biol Chem	10.1074/jbc.M116.746438	2016
Enzymology	Properties of BoAGE2, a second N-acetyl-D-glucosamine 2-epimerase from Bacteroides ovatus ATCC 8483.	Sola-Carvajal A, Sanchez-Carron G, Garcia-Garcia MI, Garcia-Carmona F, Sanchez-Ferrer A	Biochimie	10.1016/j.biochi.2011.10.012	2011
Metabolism	Co-utilization of polymerized carbon sources by Bacteroides ovatus grown in a two-stage continuous culture system.	MacFarlane GT, Gibson GR	Appl Environ Microbiol	10.1128/aem.57.1.1-6.1991	1991
Pathogenicity	Properties of Bacteroides fragilis antigens with specificity B.	Sawicka-Grzelak A, Meisel-Mikolajczyk F	Acta Microbiol Pol		1985
Enzymology	Immunochemical investigations of antigens isolated from Bacteroides ovatus strain ATCC 8483.	Beckmann I, Paelinck J, Zuijderduijn J, Sawicka-Grzelak A, Meisel-Mikolajczyk F	Antonie Van Leeuwenhoek	10.1007/BF02439936	1985
	Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers.	van Vliet DM, Lin Y, Bale NJ, Koenen M, Villanueva L, Stams AJM, Sanchez-Andrea I.	Microorganisms	10.3390/microorganisms8060920	2020
Phylogeny	Bacteroides luhongzhouii sp. nov. and Bacteroides zhangwenhongii sp. nov., isolated from human faeces.	Ge Y, Zhang G, Yang J, Lai XH, Jin D, Lu S, Pu J, Huang Y, Luo X, Zheng H, Zhang X, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004772	2021
Phylogeny	Bacteroides graminisolvens sp. nov., a xylanolytic anaerobe isolated from a methanogenic reactor treating cattle waste.	Nishiyama T, Ueki A, Kaku N, Watanabe K, Ueki K	Int J Syst Evol Microbiol	10.1099/ijs.0.008268-0	2009

References

#918	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1896
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32784	; Curators of the CIP;
#44813	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4943
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121472	Collection of Institut Pasteur ; Curators of the CIP; CIP 103756
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides ovatus (DSM 1896, ATCC 8483, NCTC 11153)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

API zym

API rID32A

API biotype100

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001314995

16S sequences

GC content

Genome-based predictions

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Literature

Literature

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@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
918	-	-	+	+	-	+	+	+	-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-
918	-	-	+	+	-	+	+	+	+/-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+/-	+	-	-	+	-	-	-	-	+	-	-	+/-	-

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
918	-	-	+	+	-	+	+	+	-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-
918	-	-	+	+	-	+	+	+	+/-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+/-	+	-	-	+	-	-	-	-	+	-	-	+/-	-

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
918	-	-	+	+	-	+	+	+	-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-
918	-	-	+	+	-	+	+	+	+/-	+	+	+	+	+/-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
918	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	+/-	+	-	-	+	-	-	-	-	+	-	-	+/-	-