Name: Streptomyces bikiniensis DSM 40235
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159098

Type strain:

Species: Streptomyces bikiniensis

Culture col. no.: DSM 40235, ISP 5235, JCM 4626, CBS 651.72, CGMCC 4.5718, IFO 13198, IFO 13350, NBRC 102592, NBRC 13198, NBRC 13350, RIA 1175, RIA 1311

Strain history: KCC S-0626 <-- IFO 13350 <-- SAJ <-- ISP 5235 (Streptomyces bikiniensis).

NCBI tax ID(s): 1896 (species)

SI-ID 400412

DSM 40235

Other strains from Streptomyces bikiniensis

S. bikiniensis DSM 40581, ATCC 11062, ETH 14303, ... (type strain)
S. bikiniensis DSM 41083, IMRU 3515

Section

Streptomyces bikiniensis DSM 40235 is a spore-forming, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bikiniensis**
	Full Scientific Name (LPSN)	Streptomyces bikiniensis Johnstone and Waksman 1947 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65921]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #65921]

Culture medium growth

[Ref.: #65921]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65921]

Culture medium composition

expand / minimize

[Ref.: #65921]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #65921]

Culture medium growth

[Ref.: #65921]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65921]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65921]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #65921]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Metabolite production	Metabolite	Production
[Ref.: #67770]		grisemycin	yes
[Ref.: #67770]		streptomycin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB184347 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65921]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseus subsp. griseus gene for 16S rRNA, partial sequence, strain: NBRC 13350	AB184347	1475	ENA	455632 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces griseus subsp. griseus NBRC 13350	GCA_000010605	complete	GenBank	455632 tax ID	*
[Ref.: #66792]	Streptomyces griseus subsp. griseus NBRC 13350	455632.4	complete	PATRIC	455632 tax ID	*
[Ref.: #66792]	Streptomyces griseus griseus NBRC 13350	641522653	complete	JGI IMG/M	455632 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces griseus subsp. griseus NBRC 13350 NBRC 13350 NCBI: GCA_000010605.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces griseus subsp. griseus NBRC 13350 NBRC 13350 NCBI: GCA_000010605.1
[Ref.: #69480]	motile	no	93.63	no
[Ref.: #69480]	flagellated	no	97.887	no
[Ref.: #69480]	gram-positive	yes	90.81	no
[Ref.: #69480]	anaerobic	no	99.074	no
[Ref.: #69480]	halophile	no	93.167	no
[Ref.: #69480]	spore-forming	yes	94.547	no
[Ref.: #69480]	glucose-util	yes	88.297	no
[Ref.: #69480]	aerobic	yes	93.983	no
[Ref.: #69480]	thermophile	no	99.256	yes
[Ref.: #69480]	glucose-ferment	no	86.816	no

Availability in culture collections External links

[Ref.: #65921]

Culture collection no.

DSM 40235, ISP 5235, JCM 4626, CBS 651.72, CGMCC 4.5718, IFO 13198, IFO 13350, NBRC 102592, NBRC 13198, NBRC 13350, RIA 1175, RIA 1311

[Ref.: #111606]

SI-ID 400412

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65921

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40235

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111606

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400412.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces griseus subsp. griseus NBRC 13350 NBRC 13350

Streptomyces griseus subsp. griseus NBRC 13350 NBRC 13350

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