Name: Agathobaculum ammoniilyticum Sanger_34
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159089

Type strain:

Species: Agathobaculum ammoniilyticum

Strain Designation: Sanger_34

Culture col. no.: DSM 102882, JCM 34985

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_34 <- H. Browne {2014}

NCBI tax ID(s): 1869227 (species)

SI-ID 403356

DSM 102882

Section

Agathobaculum ammoniilyticum Sanger_34 is a mesophilic bacterium that was isolated from Faeces from healthy human.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Agathobaculum*
	Species	**Agathobaculum ammoniilyticum**
	Full Scientific Name (LPSN)	Agathobaculum ammoniilyticum Hitch et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65912]

Culture medium

CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)

[Ref.: #65912]

Culture medium growth

[Ref.: #65912]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65912]

Culture medium composition

expand / minimize

[Ref.: #65912]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #65912]

Culture medium growth

[Ref.: #65912]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65912]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65912]			growth	37 °C

[Ref.: #65912]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65912]	Sample type/isolated from	Faeces from healthy human
[Ref.: #65912]	Geographic location (country and/or sea, region)	Cambridgeshire, Hinxton
[Ref.: #65912]	Country	United Kingdom
[Ref.: #65912]	Country ISO 3 Code	GBR
[Ref.: #65912]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65912]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agathobaculum ammoniilyticum Sanger_34	GCA_025567315	scaffold	GenBank	2981778 tax ID	*

[Ref.: #65912]

GC-content

57.0 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agathobaculum ammoniilyticum Sanger_34 NCBI: GCA_025567315.1
[Ref.: #69480]	motile	yes	70.631	no
[Ref.: #69480]	flagellated	no	71.417	no
[Ref.: #69480]	gram-positive	yes	83.502	no
[Ref.: #69480]	anaerobic	yes	99.119	no
[Ref.: #69480]	aerobic	no	96.527	no
[Ref.: #69480]	halophile	no	93.076	no
[Ref.: #69480]	spore-forming	yes	56.511	no
[Ref.: #69480]	glucose-ferment	yes	71.084	no
[Ref.: #69480]	thermophile	no	96.885	yes
[Ref.: #69480]	glucose-util	yes	89.95	no

Availability in culture collections External links

[Ref.: #65912]

Culture collection no.

DSM 102882, JCM 34985

[Ref.: #111599]

SI-ID 403356

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65912

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102882

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111599

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403356.1 )

* These data were automatically processed and therefore are not curated

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