Name: Laedolimicola ammoniilytica Sanger_04
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159087

Type strain:

Species: Laedolimicola ammoniilytica

Strain Designation: Sanger_04

Culture col. no.: DSM 102317, JCM 34983

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_04 <- H. Browne {2014}

NCBI tax ID(s): 1869227 (species)

SI-ID 402139

DSM 102317

Section

Laedolimicola ammoniilytica Sanger_04 is a mesophilic bacterium that was isolated from faeces from healthy human.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Laedolimicola*
	Species	**Laedolimicola ammoniilytica**
	Full Scientific Name (LPSN)	Laedolimicola ammoniilytica Hitch et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65910]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #65910]

Culture medium growth

[Ref.: #65910]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65910]

Culture medium composition

expand / minimize

[Ref.: #65910]

Culture medium

CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)

[Ref.: #65910]

Culture medium growth

[Ref.: #65910]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65910]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65910]			growth	37 °C

[Ref.: #65910]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65910]	Sample type/isolated from	faeces from healthy human
[Ref.: #65910]	Geographic location (country and/or sea, region)	Cambridgeshire, Hinxton
[Ref.: #65910]	Country	United Kingdom
[Ref.: #65910]	Country ISO 3 Code	GBR
[Ref.: #65910]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Laedolimicola ammoniilytica Sanger_04	GCA_025567165	scaffold	GenBank	2981771 tax ID	*

[Ref.: #65910]

GC-content

49.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Laedolimicola ammoniilytica Sanger_04 NCBI: GCA_025567165.1
[Ref.: #69480]	motile	no	90.122	no
[Ref.: #69480]	flagellated	no	94.126	no
[Ref.: #69480]	gram-positive	yes	89.151	no
[Ref.: #69480]	anaerobic	yes	99.516	no
[Ref.: #69480]	aerobic	no	98.493	no
[Ref.: #69480]	halophile	no	77.343	no
[Ref.: #69480]	spore-forming	no	75.606	no
[Ref.: #69480]	glucose-ferment	yes	78.154	no
[Ref.: #69480]	thermophile	no	97.816	yes
[Ref.: #69480]	glucose-util	yes	87.507	no

Availability in culture collections External links

[Ref.: #65910]

Culture collection no.

DSM 102317, JCM 34983

[Ref.: #111597]

SI-ID 402139

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65910

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102317

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111597

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402139.1 )

* These data were automatically processed and therefore are not curated

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