Laedolimicola ammoniilytica (DSM 102317, Sanger_04, JCM 34983)

Name: Laedolimicola ammoniilytica (DSM 102317, Sanger_04, JCM 34983)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159087

Type strain

Strain Designation Sanger_04

Culture col. no. DSM 102317 Sanger_04 JCM 34983

NCBI tax ID(s) 2981771

Special Collections DSMZ JCM

History DSMZ <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_04 <- H. Browne {2014}

Links

Laedolimicola ammoniilytica Sanger_04 is a bacterium that was isolated from faeces from healthy human.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 402139

JCM 34983,DSM 102317

@ref 20215

Last LPSN update 2026-05-29 08:44:06

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Laedolimicola

Species Laedolimicola ammoniilytica

Full scientific name Laedolimicola ammoniilytica Hitch et al. 2022

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65910	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
65910	CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)		Medium recipe at MediaDive	Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65910	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	99.123

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
65910	faeces from healthy human	Homo sapiens	Cambridgeshire, Hinxton	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2556716v1 assembly for Laedolimicola ammoniilytica Sanger_04	scaffold	GCA_025567165	2981771.5	8111548062	2981771	58.89

GC content

@ref	GC-content (mol%)	Method
65910	49.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2556716v1 assembly for Laedolimicola ammoniilytica Sanger_04
NCBI: GCA_025567165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	99.12	no
125439	gram_stain	BacteriaNetⓘ	variable	62.95	no
125439	motility	BacteriaNetⓘ	yes	65.70	no
125439	spore_formation	BacteriaNetⓘ	yes	56.03	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Laedolimicola ammoniilytica Sanger_04
NCBI: GCA_025567165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.15	no
125438	anaerobic	anaerobicⓘ	yes	87.56	no
125438	aerobic	aerobicⓘ	no	98.02	no
125438	spore-forming	spore-formingⓘ	no	58.89	no
125438	thermophilic	thermophileⓘ	no	93.44	yes
125438	flagellated	motile2+ⓘ	no	79.43	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65910	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102317
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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