Staphylococcus debuckii (DSM 105892, SDB 2975, CECT 9737)

Name: Staphylococcus debuckii (DSM 105892, SDB 2975, CECT 9737)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159066

Type strain

Culture col. no. DSM 105892 SDB 2975 CECT 9737

NCBI tax ID(s) 2044912

Special Collections DSMZ Literature strains

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Staphylococcus debuckii DSM 105892 is a mesophilic, Gram-positive, coccus-shaped prokaryote that forms circular colonies and was isolated from bovine milk.

Gram-positive coccus-shaped colony-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403722

CECT 9737,DSM 105892

@ref 20215

Last LPSN update 2025-12-16 10:08:10

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus debuckii

Full scientific name Staphylococcus debuckii Naushad et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
67898	positive	coccus-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
67898	1-2 mm	white	circular	1 days	5 % defibrinted sheep blood agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65889	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
65889	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65889	positive	growth	37	mesophilic
67898	negative	growth	45

Physiology and metabolism

Spore formation

67898

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67898	NaCl		growth	15 %
67898	NaCl	positive	growth	0-10 %

Observation

@ref	Observation
67898	Cells appear mostly in pairs or small clusters.
67898	Strains are haemolytic.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67898	15824 ChEBI	D-fructose	+	builds acid from
67898	17634 ChEBI	D-glucose	+	builds acid from
67898	16899 ChEBI	D-mannitol	+	builds acid from
67898	16024 ChEBI	D-mannose	+	builds acid from
67898	65327 ChEBI	D-xylose	+	builds acid from
67898	16467 ChEBI	L-arginine	+	assimilation
67898	17716 ChEBI	lactose	+	builds acid from
67898	17306 ChEBI	maltose	+	builds acid from
67898	28053 ChEBI	melibiose	+	builds acid from
67898	320061 ChEBI	methyl alpha-D-glucopyranoside	-	assimilation
67898	59640 ChEBI	N-acetylglucosamine	-	assimilation
67898	17632 ChEBI	nitrate	+	reduction
67898	16634 ChEBI	raffinose	+	builds acid from
67898	50144 ChEBI	sodium pyruvate	+	assimilation
67898	17992 ChEBI	sucrose	+	builds acid from
67898	27082 ChEBI	trehalose	+	builds acid from
67898	16199 ChEBI	urea	+	assimilation
67898	17151 ChEBI	xylitol	+	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Is antibiotic	Is sensitive	Sensitivity conc.
67898	28368	novobiocin			1.6 µg/mL

Enzymes

@ref	Value	Activity	Ec
67898	alkaline phosphatase	+	3.1.3.1
67898	catalase	+	1.11.1.6
67898	cytochrome oxidase	-	1.9.3.1
67898	DNase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Milk

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65889	bovine milk	Quebec	Canada	CAN	North America
67898	milk of the right fore quarter of an eighth lactation cow at 35 days-in-milk housed	tie-stall herd in Québec	Canada	CAN	North America

Taxonmaps

69479

Global distribution of 16S sequence MK121623 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	1299
Soil Samples	1443
Animal Samples	19130
Plant Samples	632
Total Samples	22504

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM371873v1 assembly for Staphylococcus debuckii SDB 2975	complete	GCA_003718735	2044912.3	2966178099	2044912	95.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65889	Staphylococcus debuckii strain SDB 2975 16S ribosomal RNA gene, partial sequence	MK121623	1540		2044912

GC content

@ref	GC-content (mol%)	Method
67898	36.6	genome sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Deciphering pathogenicity and virulence of the first Staphylococcus debuckii isolate from diabetic foot osteomyelitis.	Abi Najem CN, Magnan C, Plumet L, Ahmad-Mansour N, Pouget C, Morsli M, Pantel A, Kissa K, Sotto A, Lavigne JP, Molle V.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1489280	2024
	Comparison of non-aureus staphylococcal and mammaliicoccal species found in both composite milk and bulk-tank milk samples of dairy cows collected in tandem.	Reydams H, Toledo-Silva B, Mertens K, Piepers S, de Souza FN, Haesebrouck F, De Vliegher S.	J Dairy Sci	10.3168/jds.2022-23092	2023
	Removal of Histamine from Fish Sauce by Staphylococcus debuckii sp. Isolated from Fermented Fish.	Rungraeng N, Ohtaguchi K, Chysirichote T.	Food Technol Biotechnol	10.17113/ftb.61.03.23.7984	2023
	SkinDuo^TM as a Targeted Probiotic Therapy: Shifts in Skin Microbiota and Clinical Outcomes in Acne Patients.	Biazzo M, Pinzauti D, Podrini C.	Int J Mol Sci	10.3390/ijms26115000	2025
Phylogeny	Hydrolytic Exoenzymes Produced by Bacteria Isolated and Identified From the Gastrointestinal Tract of Bombay Duck.	Hossain TJ, Chowdhury SI, Mozumder HA, Chowdhury MNA, Ali F, Rahman N, Dey S.	Front Microbiol	10.3389/fmicb.2020.02097	2020
Phylogeny	Staphylococcus debuckii sp. nov., a coagulase-negative species from bovine milk.	Naushad S, Kanevets U, Nobrega D, Carson D, Dufour S, Roy JP, Lewis PJ, Barkema HW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003457	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65889	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105892
#67898	Sohail Naushad, Uliana Kanevets, Diego Nobrega, Domonique Carson, Simon Dufour, Jean-Philippe Roy, P. Jeffrey Lewis, Herman W. Barkema: Staphylococcus debuckii sp. nov., a coagulase-negative species from bovine milk. IJSEM 69: 2239 - 2249 2019 ( DOI 10.1099/ijsem.0.003457 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus debuckii (DSM 105892, SDB 2975, CECT 9737)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003718735

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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