Name: Staphylococcus debuckii DSM 105892
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159066

Type strain:

Species: Staphylococcus debuckii

Culture col. no.: DSM 105892, SDB 2975, CECT 9737

Strain history: <- S. Naushad, Univ. Calgary, Canada; SDB 2975

NCBI tax ID(s): 2044912 (species)

SI-ID 403722

DSM 105892

Section

Staphylococcus debuckii DSM 105892 is a mesophilic, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from bovine milk.

coccus-shaped
colony-forming
Gram-positive
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus debuckii**
	Full Scientific Name (LPSN)	Staphylococcus debuckii Naushad et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67898]	Gram stain	positive

[Ref.: #67898]	Cell shape	coccus-shaped

[Ref.: #67898]	Motility	no

[Ref.: #67898]	Colony size	1-2 mm
[Ref.: #67898]	Colony color	white
[Ref.: #67898]	Colony shape	circular
[Ref.: #67898]	Incubation period	1 days
[Ref.: #67898]	Cultivation medium used	5 % defibrinted sheep blood agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65889]			growth	37 °C
[Ref.: #67898]		no	growth	45 °C

[Ref.: #65889]	Temperature range	mesophilic
[Ref.: #67898]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67898]		NaCl	no	growth	15	%
[Ref.: #67898]		NaCl		growth	0-10	%

[Ref.: #67898]	Observation	Cells appear mostly in pairs or small clusters.
[Ref.: #67898]	Observation	Strains are haemolytic.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67898]	D-fructose ChEBI	+	builds acid from
[Ref.: #67898]	D-glucose ChEBI	+	builds acid from
[Ref.: #67898]	D-mannitol ChEBI	+	builds acid from
[Ref.: #67898]	D-mannose ChEBI	+	builds acid from
[Ref.: #67898]	D-xylose ChEBI	+	builds acid from
[Ref.: #67898]	L-arginine ChEBI	+	assimilation
[Ref.: #67898]	lactose ChEBI	+	builds acid from
[Ref.: #67898]	maltose ChEBI	+	builds acid from
[Ref.: #67898]	melibiose ChEBI	+	builds acid from
[Ref.: #67898]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #67898]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #67898]	nitrate ChEBI	+	reduction
[Ref.: #67898]	raffinose ChEBI	+	builds acid from
[Ref.: #67898]	sodium pyruvate ChEBI	+	assimilation
[Ref.: #67898]	sucrose ChEBI	+	builds acid from
[Ref.: #67898]	trehalose ChEBI	+	builds acid from
[Ref.: #67898]	urea ChEBI	+	assimilation
[Ref.: #67898]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #67898]		novobiocin ChEBI	yes	1.6	µg/mL

	Enzyme	Enzyme activity	EC number
[Ref.: #67898]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67898]	catalase	+	1.11.1.6
[Ref.: #67898]	cytochrome oxidase	-	1.9.3.1
[Ref.: #67898]	DNase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65889]	Sample type/isolated from	bovine milk
[Ref.: #65889]	Geographic location (country and/or sea, region)	Quebec
[Ref.: #65889]	Country	Canada
[Ref.: #65889]	Country ISO 3 Code	CAN
[Ref.: #65889]	Continent	North America

[Ref.: #67898]	Sample type/isolated from	milk of the right fore quarter of an eighth lactation cow at 35 days-in-milk housed
[Ref.: #67898]	Geographic location (country and/or sea, region)	tie-stall herd in Québec
[Ref.: #67898]	Country	Canada
[Ref.: #67898]	Country ISO 3 Code	CAN
[Ref.: #67898]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Milk

What are isolation sources categories?

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Global distribution of 16S sequence MK121623 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	1299
Soil Samples	1443
Animal Samples	19130
Plant Samples	632
Total Samples	22504

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65889]	Staphylococcus sp. SDB 2975 16S ribosomal RNA gene, partial sequence	MK121623	1540	ENA	2044912 tax ID

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GC-content

36.6 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65889]

Culture collection no.

DSM 105892, SDB 2975, CECT 9737

[Ref.: #111580]

SI-ID 403722

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus debuckii sp. nov., a coagulase-negative species from bovine milk.	Naushad S, Kanevets U, Nobrega D, Carson D, Dufour S, Roy JP, Lewis PJ, Barkema HW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003457	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65889

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105892

#67898

Sohail Naushad, Uliana Kanevets, Diego Nobrega, Domonique Carson, Simon Dufour, Jean-Philippe Roy, P. Jeffrey Lewis, Herman W. Barkema: Staphylococcus debuckii sp. nov., a coagulase-negative species from bovine milk. IJSEM 69: 2239 - 2249 2019 ( DOI 10.1099/ijsem.0.003457 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403722.1 )

* These data were automatically processed and therefore are not curated

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