Name: Dysosmobacter welbionis J115
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159052

Type strain:

Species: Dysosmobacter welbionis

Strain Designation: J115

Culture col. no.: DSM 106889, LMG 30601

Strain history: <- P. Cani, Catholic University of Louvain, Unit of Bioengineering, Louvain-la Neuve, Belgium; J115 <- T. Le Roy {2017}

NCBI tax ID(s): 2093857 (species)

SI-ID 401762

DSM 106889

Section

Dysosmobacter welbionis J115 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms punctiform colonies and was isolated from healthy human stool.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Dysosmobacter*
	Species	**Dysosmobacter welbionis**
	Full Scientific Name (LPSN)	Dysosmobacter welbionis Le Roy et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68170]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %99.447

[Ref.: #68170]	Cell length	1.8-3.0 µm

[Ref.: #68170]	Cell shape	rod-shaped

[Ref.: #68170]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.564

[Ref.: #68170]	Colony color	cream
[Ref.: #68170]	Colony shape	punctiform
[Ref.: #68170]	Incubation period	3 days
[Ref.: #68170]	Cultivation medium used	modified YCFA

[Ref.: #68170]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65875]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #65875]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #65875]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65875]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68170]	Oxygen tolerance	facultative anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.672

[Ref.: #68170]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.978
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68170]		NaCl	no	growth	2	%(w/v)
[Ref.: #68170]		NaCl		growth	0-1.4	%(w/v)

[Ref.: #68170]	Name of tolerated compound	Bile
[Ref.: #68170]	Tolerance percentage	0-2

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68170]	amygdalin ChEBI	-	builds acid from
[Ref.: #68170]	arbutin ChEBI	-	builds acid from
[Ref.: #68170]	cellobiose ChEBI	-	builds acid from
[Ref.: #68170]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68170]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68170]	D-fructose ChEBI	-	builds acid from
[Ref.: #68170]	D-fucose ChEBI	-	builds acid from
[Ref.: #68170]	D-galactose ChEBI	-	builds acid from
[Ref.: #68170]	D-glucose ChEBI	-	builds acid from
[Ref.: #68170]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68170]	D-mannose ChEBI	-	builds acid from
[Ref.: #68170]	D-ribose ChEBI	-	builds acid from
[Ref.: #68170]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68170]	D-xylose ChEBI	-	builds acid from
[Ref.: #68170]	erythritol ChEBI	-	builds acid from
[Ref.: #68170]	esculin ChEBI	+	hydrolysis
[Ref.: #68170]	galactitol ChEBI	-	builds acid from
[Ref.: #68170]	gelatin ChEBI	-	hydrolysis
[Ref.: #68170]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68170]	glycerol ChEBI	-	builds acid from
[Ref.: #68170]	glycogen ChEBI	-	builds acid from
[Ref.: #68170]	inulin ChEBI	-	builds acid from
[Ref.: #68170]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68170]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68170]	L-fucose ChEBI	-	builds acid from
[Ref.: #68170]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68170]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68170]	L-xylose ChEBI	-	builds acid from
[Ref.: #68170]	lactose ChEBI	-	builds acid from
[Ref.: #68170]	lyxose ChEBI	-	builds acid from
[Ref.: #68170]	maltose ChEBI	-	builds acid from
[Ref.: #68170]	melibiose ChEBI	-	builds acid from
[Ref.: #68170]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68170]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68170]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68170]	myo-inositol ChEBI	+	builds acid from
[Ref.: #68170]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68170]	nitrate ChEBI	-	reduction
[Ref.: #68170]	raffinose ChEBI	-	builds acid from
[Ref.: #68170]	ribitol ChEBI	-	builds acid from
[Ref.: #68170]	salicin ChEBI	-	builds acid from
[Ref.: #68170]	starch ChEBI	-	builds acid from
[Ref.: #68170]	sucrose ChEBI	-	builds acid from
[Ref.: #68170]	tagatose ChEBI	-	builds acid from
[Ref.: #68170]	trehalose ChEBI	-	builds acid from
[Ref.: #68170]	turanose ChEBI	-	builds acid from
[Ref.: #68170]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68170]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68170]	alanine arylamidase	-	3.4.11.2
[Ref.: #68170]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68170]	alpha-arabinosidase	-
[Ref.: #68170]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68170]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68170]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68170]	arginine arylamidase	-
[Ref.: #68170]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68170]	beta-galactosidase	-	3.2.1.23
[Ref.: #68170]	beta-glucosidase	-	3.2.1.21
[Ref.: #68170]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68170]	catalase	-	1.11.1.6
[Ref.: #68170]	glutamate decarboxylase	+	4.1.1.15
[Ref.: #68170]	glycin arylamidase	-
[Ref.: #68170]	histidine arylamidase	-
[Ref.: #68170]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #68170]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68170]	phenylalanine arylamidase	-
[Ref.: #68170]	proline-arylamidase	-	3.4.11.5
[Ref.: #68170]	pyroglutamic acid arylamidase	-
[Ref.: #68170]	serine arylamidase	-
[Ref.: #68170]	tyrosine arylamidase	-
[Ref.: #68170]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68170]

Fatty acid	Percentage
C15:0 iso	24.2
C18:0 DMA	18.4
C15:0 anteiso	15.2
C16:0 DMA	7.6
C14:0	2.4
C17:0 DMA	2.2
C14:0 iso	1.5
C15:0 anteiso-DMA	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65875]	Sample type/isolated from	healthy human stool
[Ref.: #65875]	Geographic location (country and/or sea, region)	Bruxelles
[Ref.: #65875]	Country	Belgium
[Ref.: #65875]	Country ISO 3 Code	BEL
[Ref.: #65875]	Continent	Europe

[Ref.: #68170]	Sample type/isolated from	faecal sample from a healthy 25 year old female human
[Ref.: #68170]	Geographic location (country and/or sea, region)	Brussels
[Ref.: #68170]	Country	Belgium
[Ref.: #68170]	Country ISO 3 Code	BEL
[Ref.: #68170]	Continent	Europe
[Ref.: #68170]	Geographic location	50.8515°/4.4556°
[Ref.: #68170]	Enrichment culture	modified YCFA
[Ref.: #68170]	Enrichment culture duration	2-7 days
[Ref.: #68170]	Enrichment culture temperature	37 ̊C
[Ref.: #68170]	Isolation date	2017-07-01
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG963288 (>99% sequence identity) for Dysosmobacter welbionis subclade from Microbeatlas

Aquatic Samples	2321
Soil Samples	976
Animal Samples	190177
Plant Samples	348
Total Samples	193822

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68170]	Dysosmobacter welbionis strain J115 16S ribosomal RNA gene, partial sequence	MG963288	1428	ENA	2093857 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68170]	Dysosmobacter welbionis J115	GCA_005121165	complete	GenBank	2093857 tax ID
[Ref.: #66792]	Oscillospiraceae bacterium J115	2093857.4	complete	PATRIC	2093857 tax ID	*

[Ref.: #65875]	GC-content	58.9 mol%	sequence analysis
[Ref.: #68170]	GC-content	59.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #68170]	GC-content	58.92 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dysosmobacter welbionis J115 NCBI: GCA_005121165.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oscillospiraceae bacterium J115 PATRIC: 2093857.4
[Ref.: #69480]	motile	no	90.298	no
[Ref.: #69480]	gram-positive	yes	64.083	yes
[Ref.: #69480]	anaerobic	yes	98.238	yes
[Ref.: #69480]	aerobic	no	96.396	yes
[Ref.: #69480]	halophile	no	74.879	no
[Ref.: #69480]	spore-forming	no	81.224	no
[Ref.: #69480]	glucose-util	yes	83.513	no
[Ref.: #69480]	flagellated	no	96.416	yes
[Ref.: #69480]	thermophile	no	99.454	no
[Ref.: #69480]	glucose-ferment	yes	59.839	no

Availability in culture collections External links

[Ref.: #65875]

Culture collection no.

DSM 106889, LMG 30601

[Ref.: #111566]

SI-ID 401762

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dysosmobacter welbionis gen. nov., sp. nov., isolated from human faeces and emended description of the genus Oscillibacter.	Le Roy T, Van der Smissen P, Paquot A, Delzenne N, Muccioli GG, Collet JF, Cani PD	Int J Syst Evol Microbiol	10.1099/ijsem.0.003547	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65875

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106889

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68170

Tiphaine Le Roy, Patrick Van der Smissen, Adrien Paquot, Nathalie Delzenne, Giulio G. Muccioli, Jean-François Collet and Patrice D. Cani: Dysosmobacter welbionis gen. nov., sp. nov., isolated from human faeces and emended description of the genus Oscillibacter. IJSEM 70: 4851 - 4858 2020 ( DOI 10.1099/ijsem.0.003547 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111566

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401762.1 )

* These data were automatically processed and therefore are not curated

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Dysosmobacter welbionis J115

Oscillospiraceae bacterium J115

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