Olsenella porci (DSM 105246, CA-Schmier-601-WT1, JCM 34369)

Name: Olsenella porci (DSM 105246, CA-Schmier-601-WT1, JCM 34369)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159042

Type strain

Strain Designation CA-Schmier-601-WT1, CA-Schmier-601-WT-1

Culture col. no. DSM 105246 CA-Schmier-601-WT1 JCM 34369 CA-Schmier-601-WT-1

NCBI tax ID(s) 2652279

Special Collections DSMZ JCM Pig DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; JCM <-- B. Abt; DSMZ, Germany; DSM 105246 (=CA-Schmier-601-WT-1) <-- T. Clavel; RWTH Aachen, Germany.

Links

Olsenella porci CA-Schmier-601-WT1 is a bacterium that was isolated from pig, WT, 1 year old, feces.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400942

JCM 34369,DSM 105246

@ref 20215

Last LPSN update 2026-05-29 08:44:06

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Atopobiaceae

Genus Olsenella

Species Olsenella porci

Full scientific name Olsenella porci Wylensek et al. 2021

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90.125

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65865	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65865	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	90.996

Spore formation

@ref	Spore formation	Confidence
125439		98.639

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65865	pig, WT, 1 year old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of a German Landrace pig	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537480 (>99% sequence identity) for Olsenella porci subclade from Microbeatlas

Aquatic Samples	225
Soil Samples	126
Animal Samples	1870
Plant Samples	37
Total Samples	2258

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969587v1 assembly for Olsenella porci CA-Schmier-601-WT-1	contig	GCA_009695875	2605787.3	2895296327	2652279	65.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65865	Olsenella porci strain CA-Schmier-601-WT-1 16S ribosomal RNA gene, partial sequence	MN537480	1463		2652279

GC content

@ref	GC-content (mol%)	Method
67770	64.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969587v1 assembly for Olsenella porci CA-Schmier-601-WT-1
BV-BRC: 2605787.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.00	no
125439	gram_stain	BacteriaNetⓘ	negative	53.97	no
125439	motility	BacteriaNetⓘ	no	61.82	no
125439	spore_formation	BacteriaNetⓘ	no	98.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Olsenella sp. CA-Schmier-601-WT-1
PATRIC: 2605787.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.70	no
125438	anaerobic	anaerobicⓘ	yes	87.58	no
125438	spore-forming	spore-formingⓘ	no	74.31	no
125438	aerobic	aerobicⓘ	no	95.38	no
125438	thermophilic	thermophileⓘ	no	93.68	no
125438	flagellated	motile2+ⓘ	no	90.13	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65865	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105246
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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