Name: Vibrio taketomensis C4III282
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158992

Type strain:

Species: Vibrio taketomensis

Strain Designation: C4III282

Culture col. no.: DSM 106943, CAIM 1928, JCM 33434

Strain history: T. Sawabe; Hokkaido Univ., Japan; C4III282.

NCBI tax ID(s): 2572923 (species)

SI-ID 401188

DSM 106943

Other strains from Vibrio taketomensis

V. taketomensis C4III291, DSM 106942, CAIM 1929

Section

Vibrio taketomensis C4III282 is a mesophilic bacterium that was isolated from seawater.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio taketomensis**
	Full Scientific Name (LPSN)	Vibrio taketomensis Tanaka et al. 2021

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

DSM 106942 on medium 514f at 25 °C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65815]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #65815]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #65815]	24694	+	-	+	+	-	-	-	-	+	-	+	-	+	+	+	+	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65815]	Sample type/isolated from	seawater
[Ref.: #65815]	Geographic location (country and/or sea, region)	Taketomi, Okinawa, Exclusive economic zone (24° 20' 18.1'' N, 124° 25' 56.5'' E)
[Ref.: #65815]	Country	Japan
[Ref.: #65815]	Country ISO 3 Code	JPN
[Ref.: #65815]	Continent	Asia
[Ref.: #65815]	Geographic location	24.3384°/124.0990°

[Ref.: #67770]	Sample type/isolated from	Seawater from a site off the Taketomicoral coral reef
[Ref.: #67770]	Geographic location (country and/or sea, region)	Okinawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC469309 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	733
Soil Samples	42
Animal Samples	407
Plant Samples	80
Total Samples	1262

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65815]	Vibrio taketomensis C4III282 gene for 16S ribosomal RNA, partial sequence	LC469309	1501	ENA	2572923 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio taketomensis C4III282	GCA_009938165	complete	GenBank	2572923 tax ID	*
[Ref.: #66792]	Vibrio taketomensis strain C4III282	2572923.3	complete	PATRIC	2572923 tax ID	*
[Ref.: #66792]	Vibrio taketomensis C4III282	2908849201	complete	JGI IMG/M	2572923 tax ID	*

[Ref.: #65815]	GC-content	44.3 mol%	sequence analysis
[Ref.: #67770]	GC-content	44.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio taketomensis C4III282 NCBI: GCA_009938165.1
[Ref.: #69480]	motile	yes	90.467	no
[Ref.: #69480]	flagellated	yes	84.508	no
[Ref.: #69480]	gram-positive	no	99.125	no
[Ref.: #69480]	anaerobic	no	95.54	no
[Ref.: #69480]	aerobic	yes	82.878	no
[Ref.: #69480]	halophile	yes	55.769	no
[Ref.: #69480]	spore-forming	no	94.424	no
[Ref.: #69480]	glucose-util	yes	89.623	yes
[Ref.: #69480]	thermophile	no	98.72	yes
[Ref.: #69480]	glucose-ferment	yes	89.385	yes

Availability in culture collections External links

[Ref.: #65815]

Culture collection no.

DSM 106943, CAIM 1928, JCM 33434

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SI-ID 401188

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio taketomensis sp. nov. by genome taxonomy.	Tanaka M, Hongyu B, Jiang C, Mino S, Milet Meirelles P, Thompson F, Gomez-Gil B, Sawabe T	Syst Appl Microbiol	10.1016/j.syapm.2019.126048	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65815

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106943

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111508

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401188.1 )

* These data were automatically processed and therefore are not curated

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