Name: Lentilactobacillus buchneri subsp. silagei DSM 107969
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158989

Type strain:

Species: Lentilactobacillus buchneri subsp. silagei

Culture col. no.: DSM 107969, JCM 32599, SG 162

Strain history: M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; SG162.

NCBI tax ID(s): 2737512 (subspecies)

SI-ID 398402

DSM 107969

Section

Lentilactobacillus buchneri subsp. silagei DSM 107969 is a mesophilic bacterium that was isolated from fermented rice grain.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lentilactobacillus*
	Species	**Lentilactobacillus buchneri subsp. silagei**
	Full Scientific Name (LPSN)	Lentilactobacillus buchneri subsp. silagei (Tanizawa et al. 2020) Liu and Gu 2020

Synonym

Lactobacillus buchneri subsp. silagei

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65812]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #65812]

Culture medium growth

[Ref.: #65812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65812]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65812]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #65812]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65812]	Murein short key	A11.31
[Ref.: #65812]	Murein types	A4alpha L-Lys-D-Asp

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65812]	Sample type/isolated from	fermented rice grain
[Ref.: #65812]	Geographic location (country and/or sea, region)	Tochigi
[Ref.: #65812]	Country	Japan
[Ref.: #65812]	Country ISO 3 Code	JPN
[Ref.: #65812]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rice grain silage in Japan
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Host	#Plants	#Shrub (Scrub)
#Engineered	#Food production	#Vegetable (incl. Grains)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC507198 (>99% sequence identity) for Lentilactobacillus from Microbeatlas

Aquatic Samples	432
Soil Samples	442
Animal Samples	3255
Plant Samples	396
Total Samples	4525

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65812]	Lactobacillus buchneri subsp. silagei SG162 gene for 16S ribosomal RNA, partial sequence	LC507198	1497	ENA	2737512 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lentilactobacillus buchneri subsp. silagei SG162	GCA_013167835	scaffold	GenBank	2737512 tax ID

[Ref.: #67770]

GC-content

44.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lentilactobacillus buchneri subsp. silagei SG162 NCBI: GCA_013167835.1
[Ref.: #69480]	flagellated	no	98.545	no
[Ref.: #69480]	gram-positive	yes	97.856	no
[Ref.: #69480]	anaerobic	no	94.395	no
[Ref.: #69480]	aerobic	no	92.29	no
[Ref.: #69480]	halophile	yes	93.082	no
[Ref.: #69480]	spore-forming	no	92.505	no
[Ref.: #69480]	glucose-util	yes	89.314	no
[Ref.: #69480]	thermophile	no	98.983	yes
[Ref.: #69480]	motile	no	95.989	no
[Ref.: #69480]	glucose-ferment	yes	87.566	no

Availability in culture collections External links

[Ref.: #65812]

Culture collection no.

DSM 107969, JCM 32599, SG 162

[Ref.: #111505]

SI-ID 398402

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65812

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107969

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398402.1 )

* These data were automatically processed and therefore are not curated

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Lentilactobacillus buchneri subsp. silagei SG162

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