Ligilactobacillus ruminis (DSM 107447, LKV-472-APC-10)

Name: Ligilactobacillus ruminis (DSM 107447, LKV-472-APC-10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158988

Type strain

Strain Designation LKV-472-APC-10

Culture col. no. DSM 107447 LKV-472-APC-10

NCBI tax ID(s) 1623

Special Collections DSMZ Pig DZIF

History DSMZ <- T. Clavel / D. Wylensek, Institute of Medical Microbiology, University Hospital of RWTH Aachen, Aachen, Germany; LKV-472-APC-10

Links

Ligilactobacillus ruminis LKV-472-APC-10 is a bacterium that was isolated from feces; pig, 9 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401225

DSM 107447

@ref 20215

Last LPSN update 2026-05-29 08:44:05

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus ruminis

Full scientific name Ligilactobacillus ruminis (Sharpe et al. 1973) Zheng et al. 2020

Synonyms (1)

Lactobacillus ruminis

BacDive ID	Other strains from **Ligilactobacillus ruminis** (3)	Type strain
6510	L. ruminis RFl, RF 1, DSM 20403, ATCC 27780, CCUG 39465, ... (type strain)
6511	L. ruminis RF 2, DSM 20404, ATCC 27781, JCM 1182, LMG ...
6512	L. ruminis 244, DSM 20511

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65811	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65811	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65811	feces; pig, 9 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537535 (>99% sequence identity) for Ligilactobacillus ruminis subclade from Microbeatlas

Aquatic Samples	6299
Soil Samples	2943
Animal Samples	110193
Plant Samples	977
Total Samples	120412

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65811	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284360v1 assembly for Ligilactobacillus ruminis LKV-472-APC-10	contig	GCA_012843605	1623.249	1623	53.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65811	Ligilactobacillus ruminis strain DSM 107447 16S ribosomal RNA gene, partial sequence	MN537535	1501		1623

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ligilactobacillus ruminis LKV-472-APC-10
NCBI: GCA_012843605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.40	no
125438	anaerobic	anaerobicⓘ	no	65.25	no
125438	aerobic	aerobicⓘ	no	96.99	no
125438	spore-forming	spore-formingⓘ	no	71.25	no
125438	thermophilic	thermophileⓘ	no	95.24	yes
125438	flagellated	motile2+ⓘ	yes	56.07	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65811	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107447
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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