Collinsella aerofaciens (DSM 108492, WCA1-178-WT-3 (M1))

Name: Collinsella aerofaciens (DSM 108492, WCA1-178-WT-3 (M1))
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158953

Type strain

Strain Designation WCA1-178-WT-3 (M1)

Culture col. no. DSM 108492 WCA1-178-WT-3 (M1)

NCBI tax ID(s) 74426

Special Collections DSMZ Pig DZIF

History <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA1-178-WT-3(M1)

Links

Collinsella aerofaciens WCA1-178-WT-3 is a mesophilic prokaryote that was isolated from feces; pig ,3 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402583

DSM 108492

@ref 20215

Last LPSN update 2026-02-09 11:38:28

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Coriobacteriaceae

Genus Collinsella

Species Collinsella aerofaciens

Full scientific name Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999

Synonyms (2)

Eubacterium aerofaciens
"Bacteroides aerofaciens"

BacDive ID	Other strains from **Collinsella aerofaciens** (48)	Type strain
3044	C. aerofaciens CCUG 28087, JCM 10188, DSM 3979, ATCC 25986, ... (type strain)
3045	C. aerofaciens H818, DSM 13712
150433	C. aerofaciens CCUG 39917
150434	C. aerofaciens CCUG 39918
156755	C. aerofaciens CCUG 64885
158950	C. aerofaciens H2_9, DSM 108202
158951	C. aerofaciens H1_8, DSM 108203
158952	C. aerofaciens H5_8, DSM 108204
158954	C. aerofaciens WCA-178-WT-3 (M2), DSM 108837
161038	C. aerofaciens JCM 10772
161039	C. aerofaciens JCM 10773
161040	C. aerofaciens JCM 10774
161041	C. aerofaciens JCM 10775
161042	C. aerofaciens JCM 10777
161043	C. aerofaciens JCM 10778
161044	C. aerofaciens JCM 10779
161045	C. aerofaciens JCM 10780
161046	C. aerofaciens JCM 10781
161047	C. aerofaciens JCM 10782
161048	C. aerofaciens JCM 10783
161049	C. aerofaciens JCM 10784
161050	C. aerofaciens JCM 10785
161051	C. aerofaciens JCM 10786
161052	C. aerofaciens JCM 10787
161053	C. aerofaciens JCM 10788
161054	C. aerofaciens JCM 10789
161055	C. aerofaciens JCM 10790
161056	C. aerofaciens JCM 10791
161057	C. aerofaciens JCM 10792
161058	C. aerofaciens JCM 10793
161059	C. aerofaciens JCM 10794
161060	C. aerofaciens JCM 10795
161061	C. aerofaciens JCM 10796
161062	C. aerofaciens JCM 10797
161063	C. aerofaciens JCM 10798
161064	C. aerofaciens JCM 10799
161065	C. aerofaciens JCM 10800
161066	C. aerofaciens JCM 10801
161067	C. aerofaciens JCM 10802
161068	C. aerofaciens JCM 10803
161069	C. aerofaciens JCM 10804
161070	C. aerofaciens JCM 10805
161071	C. aerofaciens JCM 10806
161072	C. aerofaciens JCM 10807
161073	C. aerofaciens JCM 10808
161075	C. aerofaciens JCM 10826
165615	C. aerofaciens JCM 7790, ATCC 35085
165616	C. aerofaciens JCM 7791, ATCC 29738

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65776	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65776	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	91.749

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65776	feces; pig ,3 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537543 (>99% sequence identity) for Collinsella aerofaciens subclade from Microbeatlas

Aquatic Samples	10797
Soil Samples	2340
Animal Samples	216978
Plant Samples	837
Total Samples	230952

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65776	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969632v1 assembly for Collinsella sp. WCA1-178-WT-3 (M1)	contig	GCA_009696325	2605779.3	2899496628	2605779	64.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65776	Collinsella aerofaciens strain DSM 108492 16S ribosomal RNA gene, partial sequence	MN537543	1451		74426

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Collinsella sp. WCA1-178-WT-3 (M1) strain WCA1-178-WT-3 (M1) strain WCA1-178-WT-3 (M1) strain WCA1-178-WT-3 (M1)
PATRIC: 2605779.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	82.00	no
125439	gram_stain	BacteriaNetⓘ	negative	98.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	74.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Collinsella sp. WCA1-178-WT-3 (M1) strain WCA1-178-WT-3 (M1) strain WCA1-178-WT-3 (M1) strain WCA1-178-WT-3 (M1)
PATRIC: 2605779.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.87	no
125438	anaerobic	anaerobicⓘ	yes	91.75	no
125438	spore-forming	spore-formingⓘ	no	81.31	no
125438	aerobic	aerobicⓘ	no	97.64	no
125438	thermophilic	thermophileⓘ	no	93.43	yes
125438	flagellated	motile2+ⓘ	no	87.58	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65776	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108492
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us