Collinsella aerofaciens (DSM 108204, H5_8)

Name: Collinsella aerofaciens (DSM 108204, H5_8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158952

Type strain

Strain Designation H5_8

Culture col. no. DSM 108204 H5_8

NCBI tax ID(s) 74426

Special Collections DSMZ Sanger human gut

History <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; H5_8

Links

Collinsella aerofaciens H5_8 is a mesophilic prokaryote that was isolated from human faeces.

mesophilic

Name and taxonomic classification

SI-ID 398172

DSM 108204

@ref 20215

Last LPSN update 2026-02-09 11:38:28

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Coriobacteriaceae

Genus Collinsella

Species Collinsella aerofaciens

Full scientific name Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999

Synonyms (2)

Eubacterium aerofaciens
"Bacteroides aerofaciens"

BacDive ID	Other strains from **Collinsella aerofaciens** (48)	Type strain
3044	C. aerofaciens CCUG 28087, JCM 10188, DSM 3979, ATCC 25986, ... (type strain)
3045	C. aerofaciens H818, DSM 13712
150433	C. aerofaciens CCUG 39917
150434	C. aerofaciens CCUG 39918
156755	C. aerofaciens CCUG 64885
158950	C. aerofaciens H2_9, DSM 108202
158951	C. aerofaciens H1_8, DSM 108203
158953	C. aerofaciens WCA1-178-WT-3 (M1), DSM 108492
158954	C. aerofaciens WCA-178-WT-3 (M2), DSM 108837
161038	C. aerofaciens JCM 10772
161039	C. aerofaciens JCM 10773
161040	C. aerofaciens JCM 10774
161041	C. aerofaciens JCM 10775
161042	C. aerofaciens JCM 10777
161043	C. aerofaciens JCM 10778
161044	C. aerofaciens JCM 10779
161045	C. aerofaciens JCM 10780
161046	C. aerofaciens JCM 10781
161047	C. aerofaciens JCM 10782
161048	C. aerofaciens JCM 10783
161049	C. aerofaciens JCM 10784
161050	C. aerofaciens JCM 10785
161051	C. aerofaciens JCM 10786
161052	C. aerofaciens JCM 10787
161053	C. aerofaciens JCM 10788
161054	C. aerofaciens JCM 10789
161055	C. aerofaciens JCM 10790
161056	C. aerofaciens JCM 10791
161057	C. aerofaciens JCM 10792
161058	C. aerofaciens JCM 10793
161059	C. aerofaciens JCM 10794
161060	C. aerofaciens JCM 10795
161061	C. aerofaciens JCM 10796
161062	C. aerofaciens JCM 10797
161063	C. aerofaciens JCM 10798
161064	C. aerofaciens JCM 10799
161065	C. aerofaciens JCM 10800
161066	C. aerofaciens JCM 10801
161067	C. aerofaciens JCM 10802
161068	C. aerofaciens JCM 10803
161069	C. aerofaciens JCM 10804
161070	C. aerofaciens JCM 10805
161071	C. aerofaciens JCM 10806
161072	C. aerofaciens JCM 10807
161073	C. aerofaciens JCM 10808
161075	C. aerofaciens JCM 10826
165615	C. aerofaciens JCM 7790, ATCC 35085
165616	C. aerofaciens JCM 7791, ATCC 29738

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65775	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
65775	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65775	positive	growth	37	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
65775	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+/-	-	-	-	+/-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65775	human faeces	United Kingdom	GBR	Europe	52.0797	0.1856 52.0797/0.1856

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65775	2	Risk group (German classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65775	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108204
#68380	Automatically annotated from API rID32A .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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