Desulfovibrio piger (DSM 106036, PG-251-APC-1)

Name: Desulfovibrio piger (DSM 106036, PG-251-APC-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158923

Type strain

Strain Designation PG-251-APC-1

Culture col. no. DSM 106036 PG-251-APC-1

NCBI tax ID(s) 901

Special Collections DSMZ Pig DZIF

History <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

Links

Desulfovibrio piger PG-251-APC-1 is a mesophilic prokaryote that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401543

DSM 106036

@ref 20215

Last LPSN update 2026-02-09 11:38:27

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Desulfovibrio

Species Desulfovibrio piger

Full scientific name Desulfovibrio piger (Moore et al. 1976) Loubinoux et al. 2002

Synonyms (1)

Desulfomonas pigra

BacDive ID	Other strains from **Desulfovibrio piger** (1)	Type strain
4070	D. piger DSM 749, ATCC 29098, JCM 12224, VPI 11112, ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65745	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Haemin 0.005 g/l Vitamin K3 0.0005 g/l Sodium resazurin 0.0005 g/l Distilled water Water Vitamin K1 NaOH
65745	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65745	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	95.9

Spore formation

@ref	Spore formation	Confidence
125439		94.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65745	feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Munich	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537505 (>99% sequence identity) for Desulfovibrio piger subclade from Microbeatlas

Aquatic Samples	4606
Soil Samples	1726
Animal Samples	113854
Plant Samples	581
Total Samples	120767

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65745	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284387v1 assembly for Desulfovibrio piger PG-251-APC-1	contig	GCA_012843875	901.332	901	51.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65745	Desulfovibrio piger strain DSM 106036 16S ribosomal RNA gene, partial sequence	MN537505	1458		901

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfovibrio piger PG-251-APC-1
NCBI: GCA_012843875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.50	no
125439	motility	BacteriaNetⓘ	yes	74.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	95.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfovibrio piger PG-251-APC-1
NCBI: GCA_012843875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	84.64	no
125438	anaerobic	anaerobicⓘ	yes	87.78	no
125438	aerobic	aerobicⓘ	no	87.81	no
125438	spore-forming	spore-formingⓘ	no	84.04	no
125438	thermophilic	thermophileⓘ	no	86.14	yes
125438	flagellated	motile2+ⓘ	no	53.15	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65745	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106036
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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