Sharpea porci (DSM 108165, CA-Schmier-601-WT-31, JCM 34378)

Name: Sharpea porci (DSM 108165, CA-Schmier-601-WT-31, JCM 34378)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158900

Type strain

Strain Designation CA-Schmier-601-WT-31, CA-Schmier-601-WT-3

Culture col. no. DSM 108165 CA-Schmier-601-WT-31 JCM 34378 CA-Schmier-601-WT-3

NCBI tax ID(s) 2652286

Special Collections DSMZ JCM Pig DZIF

History DSMZ <- T. Clavel, TU Munich; JCM <-- B. Abt; DSMZ, Germany; DSM 108165 (=CA-Schmier-601-WT-3) <-- T. Clavel; RWTH Aachen, Germany.

Links

Sharpea porci CA-Schmier-601-WT-31 is a bacterium that was isolated from pig, WT, 24 weeks old, feces.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404297

JCM 34378,DSM 108165

@ref 20215

Last LPSN update 2026-05-29 08:44:04

Domain Bacteria

Phylum Bacillota

Class Erysipelotrichia

Order Erysipelotrichales

Family Coprobacillaceae

Genus Sharpea

Species Sharpea porci

Full scientific name Sharpea porci Wylensek et al. 2021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65722	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
65722	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
65722	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.293

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65722	pig, WT, 24 weeks old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of a German Landrace pig	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537541 (>99% sequence identity) for Sharpea from Microbeatlas

Aquatic Samples	71
Soil Samples	259
Animal Samples	7786
Plant Samples	75
Total Samples	8191

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65722	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969565v1 assembly for Sharpea porci CA-Schmier-601-WT-3	contig	GCA_009695655	322505.9	2995035108	2652286	62.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65722	Sharpea porci strain CA-Schmier-601-WT-3 16S ribosomal RNA gene, partial sequence	MN537541	1493		2652286

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969565v1 assembly for Sharpea porci CA-Schmier-601-WT-3
BV-BRC: 322505.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.29	no
125439	gram_stain	BacteriaNetⓘ	positive	70.10	no
125439	motility	BacteriaNetⓘ	no	66.71	no
125439	spore_formation	BacteriaNetⓘ	no	70.01	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sharpea azabuensis strain CA-Schmier-601-WT-3
PATRIC: 322505.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.20	no
125438	anaerobic	anaerobicⓘ	yes	86.30	no
125438	spore-forming	spore-formingⓘ	no	71.79	no
125438	aerobic	aerobicⓘ	no	98.64	no
125438	thermophilic	thermophileⓘ	no	94.27	yes
125438	flagellated	motile2+ⓘ	no	80.11	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65722	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108165
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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