Name: Selenomonas montiformis WCA-380-WT-3B3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158896

Type strain:

Species: Selenomonas montiformis

Strain Designation: WCA-380-WT-3B3, WCA-380-WT-3B 3/

Culture col. no.: DSM 106892, JCM 34373

Strain history: B. Abt; DSMZ, Germany; DSM 106892 (=WCA-380-WT-3B3) <-- T. Clavel; RWTH Aachen, Germany.

NCBI tax ID(s): 2652285 (species)

SI-ID 400030

DSM 106892

Section

Selenomonas montiformis WCA-380-WT-3B3 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from feces; pig, 16 weeks old, wild type.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Selenomonadaceae*
	Genus	*Selenomonas*
	Species	**Selenomonas montiformis**
	Full Scientific Name (LPSN)	Selenomonas montiformis Wylensek et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.839

[Ref.: #69645]	Cell length	1-2 µm

[Ref.: #69645]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65718]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #65718]

Culture medium growth

[Ref.: #65718]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65718]

Culture medium composition

expand / minimize

[Ref.: #65718]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #65718]

Culture medium growth

[Ref.: #65718]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65718]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

Wilkins-Chalgren Anaerobe broth

[Ref.: #69645]

Culture medium growth

[Ref.: #69645]

Culture medium composition

expand / minimize

[Ref.: #69645]

Culture medium

modified YCFA

[Ref.: #69645]

Culture medium growth

		Temperature
[Ref.: #65718]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #69645]	growth	37 °C

[Ref.: #65718]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69645]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69645]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.565
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69645]	glucose ChEBI	+	assimilation
[Ref.: #69645]	succinate ChEBI	+	assimilation
[Ref.: #69645]	valerate ChEBI	+	assimilation

	Metabolite	Production
[Ref.: #69645]	acetate ChEBI	yes
[Ref.: #69645]	isobutyrate ChEBI	yes
[Ref.: #69645]	lactate ChEBI	yes
[Ref.: #69645]	propionate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65718]	Sample type/isolated from	feces; pig, 16 weeks old, wild type
[Ref.: #65718]	Geographic location (country and/or sea, region)	Kranzberg (Bavaria)
[Ref.: #65718]	Country	Germany
[Ref.: #65718]	Country ISO 3 Code	DEU
[Ref.: #65718]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Feces of a German Landrace pig
[Ref.: #67770]	Geographic location (country and/or sea, region)	Freising
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #69645]	Sample type/isolated from	Pig feces
[Ref.: #69645]	Geographic location (country and/or sea, region)	Thalhausen, Bavaria
[Ref.: #69645]	Country	Germany
[Ref.: #69645]	Country ISO 3 Code	DEU
[Ref.: #69645]	Continent	Europe
[Ref.: #69645]	Enrichment culture	Wilkins-Chalgren Anaerobe broth
[Ref.: #69645]	Enrichment culture duration	1-2 days
[Ref.: #69645]	Enrichment culture temperature	37 ̊C
[Ref.: #69645]	Isolation/enrichment procedure	anaerobic
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN537516 (>99% sequence identity) for Selenomonas from Microbeatlas

Aquatic Samples	125
Soil Samples	214
Animal Samples	7694
Plant Samples	93
Total Samples	8126

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65718]	Selenomonas sp. DSM 106892 16S ribosomal RNA gene, partial sequence	MN537516	1491	ENA	2652285 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69645]	Whole genome shotgun	VUNL00000000		GenBank	2652285 tax ID
[Ref.: #66792]	Selenomonas montiformis WCA-380-WT-3B3	GCA_009697385	contig	GenBank	2652285 tax ID	*
[Ref.: #66792]	Selenomonas sp. WCA-380-WT-3B 3/	2605788.3	wgs	PATRIC	2652285 tax ID	*

[Ref.: #69645]

GC-content

52.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Selenomonas sp. WCA-380-WT-3B 3/ PATRIC: 2605788.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Selenomonas sp. WCA-380-WT-3B 3/ PATRIC: 2605788.3
[Ref.: #69480]	motile	yes	85.092	no
[Ref.: #69480]	gram-positive	no	96.602	no
[Ref.: #69480]	anaerobic	yes	99.635	no
[Ref.: #69480]	aerobic	no	98.719	no
[Ref.: #69480]	halophile	no	93.366	no
[Ref.: #69480]	spore-forming	no	86.571	no
[Ref.: #69480]	glucose-util	yes	76.69	no
[Ref.: #69480]	flagellated	no	60.52	no
[Ref.: #69480]	thermophile	no	92.996	yes
[Ref.: #69480]	glucose-ferment	yes	59.169	no

Availability in culture collections External links

[Ref.: #65718]

Culture collection no.

DSM 106892, JCM 34373

[Ref.: #111415]

SI-ID 400030

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65718

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106892

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69645

David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat. Commun. 11: 2020 ( DOI 10.1038/s41467-020-19929-w )

#111415

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400030.1 )

* These data were automatically processed and therefore are not curated

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Selenomonas sp. WCA-380-WT-3B 3/

Selenomonas sp. WCA-380-WT-3B 3/

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